miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 123855 0.66 0.987672
Target:  5'- uGGCGGAG---AGGAcgccgcacCCCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCaguUCCUau------GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 125160 0.69 0.941162
Target:  5'- cGCGGAGagcuUCGAGGAcuucguggccgGCCCCuuccaggUGGCc -3'
miRNA:   3'- cCGCCUC----AGUUCCUa----------UGGGGua-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 125619 0.74 0.740702
Target:  5'- aGGCGuGGGUCAGGuauucGGUcACCCgGUUGGCc -3'
miRNA:   3'- -CCGC-CUCAGUUC-----CUA-UGGGgUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 126999 0.71 0.909522
Target:  5'- aGCGcGGGUCGuacccGGGUcCCCCGUaGGCg -3'
miRNA:   3'- cCGC-CUCAGUu----CCUAuGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127057 0.73 0.805209
Target:  5'- cGGCGGAGggaagcUCAucGGGUAUCCCGUUcccggagcggagGGCg -3'
miRNA:   3'- -CCGCCUC------AGUu-CCUAUGGGGUAA------------CCG- -5'
9281 3' -53.2 NC_002512.2 + 127659 0.67 0.986113
Target:  5'- cGGaCGGccGGUCGAGGGccGCUCCGgccgcGGCg -3'
miRNA:   3'- -CC-GCC--UCAGUUCCUa-UGGGGUaa---CCG- -5'
9281 3' -53.2 NC_002512.2 + 127846 0.68 0.975962
Target:  5'- -cCGGAGUCc-GGAgcgggAUCCCGUgGGCg -3'
miRNA:   3'- ccGCCUCAGuuCCUa----UGGGGUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 127925 0.69 0.941162
Target:  5'- gGGCGGA-UCGguAGGGUACCCgA--GGCc -3'
miRNA:   3'- -CCGCCUcAGU--UCCUAUGGGgUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 128417 0.73 0.830735
Target:  5'- uGGCGGGGUCGccGGAgcccuCCUCGcgGGCg -3'
miRNA:   3'- -CCGCCUCAGUu-CCUau---GGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 130479 0.71 0.909522
Target:  5'- gGGCGGAGaCGaagccgccccGGGAguccggACCCCGacgcUGGCg -3'
miRNA:   3'- -CCGCCUCaGU----------UCCUa-----UGGGGUa---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 130852 0.67 0.978332
Target:  5'- cGGCGGucGGgCGAGGc--CCCCAccgGGCg -3'
miRNA:   3'- -CCGCC--UCaGUUCCuauGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 132104 0.66 0.992599
Target:  5'- cGGacCGGGGcUCGAGGGccGCCCgGUaGGCc -3'
miRNA:   3'- -CC--GCCUC-AGUUCCUa-UGGGgUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 133317 0.66 0.992599
Target:  5'- aGGCGG-GagGAGGA--UCCUAUaaaUGGCg -3'
miRNA:   3'- -CCGCCuCagUUCCUauGGGGUA---ACCG- -5'
9281 3' -53.2 NC_002512.2 + 133646 0.67 0.980734
Target:  5'- uGGCGGAGUCcGGGGcggucGCCgCCGccgccgcggccgccgUGGCc -3'
miRNA:   3'- -CCGCCUCAGuUCCUa----UGG-GGUa--------------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 134162 0.71 0.897127
Target:  5'- cGGCGGGGaCGGGGAgccgucuuCCCCucccGGCc -3'
miRNA:   3'- -CCGCCUCaGUUCCUau------GGGGuaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 136185 0.73 0.821549
Target:  5'- cGGCGGGGUCGccGGGAUcgcgucgACgCCGgcGGCc -3'
miRNA:   3'- -CCGCCUCAGU--UCCUA-------UGgGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 136390 0.67 0.982547
Target:  5'- cGGCcaGAG-CAAGGAgggaaccaACCCCAUcUGGUa -3'
miRNA:   3'- -CCGc-CUCaGUUCCUa-------UGGGGUA-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 138674 0.69 0.945624
Target:  5'- cGGUGGAcUCGcuGAacgUGCCCCGggUGGCg -3'
miRNA:   3'- -CCGCCUcAGUucCU---AUGGGGUa-ACCG- -5'
9281 3' -53.2 NC_002512.2 + 143582 0.68 0.973408
Target:  5'- cGGCGGAG--AGGGAggcGCCCUugcGUgcgGGCc -3'
miRNA:   3'- -CCGCCUCagUUCCUa--UGGGG---UAa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 150308 0.68 0.964899
Target:  5'- aGGCGGAGgagcgagaccggcggCGAGGAcGCCgCGgcGGUg -3'
miRNA:   3'- -CCGCCUCa--------------GUUCCUaUGGgGUaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.