miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 96759 0.67 0.936458
Target:  5'- cGGGGCCCC-GUCCgaGCGGcgccaugcaGAucuCACACg -3'
miRNA:   3'- -UCCUGGGGcCAGGa-CGCU---------UUu--GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 48427 0.67 0.936458
Target:  5'- cGGACUucgaCCGGaUCCUGaCGAAGACgACGg -3'
miRNA:   3'- uCCUGG----GGCC-AGGAC-GCUUUUG-UGUg -5'
9286 5' -55.5 NC_002512.2 + 152789 0.67 0.926466
Target:  5'- cGGGCCUCcgucucggaGGUCCgcgGCGAcgGCGgGCg -3'
miRNA:   3'- uCCUGGGG---------CCAGGa--CGCUuuUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 192576 0.68 0.92329
Target:  5'- cGGGGCCUCGGagcggaccgucccgcUgCUGCGGc-GCGCGCg -3'
miRNA:   3'- -UCCUGGGGCC---------------AgGACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 9305 0.68 0.921127
Target:  5'- cGGAUCCCGGcacUCCaucggGCG---GCGCACg -3'
miRNA:   3'- uCCUGGGGCC---AGGa----CGCuuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 86244 0.68 0.921127
Target:  5'- gAGGACCCgGGggagagggCCgagGCGggGAgGgACg -3'
miRNA:   3'- -UCCUGGGgCCa-------GGa--CGCuuUUgUgUG- -5'
9286 5' -55.5 NC_002512.2 + 60077 0.68 0.921127
Target:  5'- cGGugCCCGuGUUccgaCUGCGGAAcgGCACg -3'
miRNA:   3'- uCCugGGGC-CAG----GACGCUUUugUGUG- -5'
9286 5' -55.5 NC_002512.2 + 112775 0.68 0.91948
Target:  5'- cGGGGCCCCgugccgcugugccgGGUCCaggGCGGcc-CGCACc -3'
miRNA:   3'- -UCCUGGGG--------------CCAGGa--CGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 112065 0.68 0.91948
Target:  5'- cAGGACgUCGGUCCgccGCGAGcccgucgccuggcgGACcCACg -3'
miRNA:   3'- -UCCUGgGGCCAGGa--CGCUU--------------UUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 153009 0.68 0.915558
Target:  5'- cGGuCCCCGGUCgggucgGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga----CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 161036 0.68 0.915558
Target:  5'- uGGcgaCCCGcUCCUGCGG--ACGCACg -3'
miRNA:   3'- uCCug-GGGCcAGGACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152959 0.68 0.915558
Target:  5'- cGGuCCCCGGUCgggucgGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga----CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 108592 0.68 0.915558
Target:  5'- gGGGGCCCCGGgga-GCGGcgGC-CGCg -3'
miRNA:   3'- -UCCUGGGGCCaggaCGCUuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 72537 0.68 0.915558
Target:  5'- cGGACCUCGGcggCCagGCG-GAACACGg -3'
miRNA:   3'- uCCUGGGGCCa--GGa-CGCuUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 81287 0.68 0.912108
Target:  5'- gGGGGCggUCCGGgCCUGCGggGuggguuuguuggccaGCugGCg -3'
miRNA:   3'- -UCCUG--GGGCCaGGACGCuuU---------------UGugUG- -5'
9286 5' -55.5 NC_002512.2 + 11336 0.68 0.909763
Target:  5'- cGGACgCCGGcgggagGCGAGAGCGCAa -3'
miRNA:   3'- uCCUGgGGCCagga--CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 3588 0.68 0.909763
Target:  5'- cAGG-CCCCGGgggUCU-CGggGACAgGCg -3'
miRNA:   3'- -UCCuGGGGCCa--GGAcGCuuUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 108971 0.68 0.909171
Target:  5'- uGGGCCCUGG-CCaGCGAacugaagAAGCGgGCg -3'
miRNA:   3'- uCCUGGGGCCaGGaCGCU-------UUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 173395 0.68 0.90798
Target:  5'- cGGGACCgUcGUCCUGCGGGAccucuccgucgaucGCAuCGCg -3'
miRNA:   3'- -UCCUGGgGcCAGGACGCUUU--------------UGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 162734 0.68 0.903741
Target:  5'- cGGuCCuauCCGGUCUUGUGAGAGcCugACg -3'
miRNA:   3'- uCCuGG---GGCCAGGACGCUUUU-GugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.