miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 110670 0.67 0.949742
Target:  5'- cGGGCagCCGGUCCUG-GugcuCGCGCa -3'
miRNA:   3'- uCCUGg-GGCCAGGACgCuuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152911 0.67 0.949742
Target:  5'- cGGuCCCCGGUCggucaGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga---CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 60226 0.67 0.949742
Target:  5'- cGGACgcagCUGGUCCUGgCGGAGAuCAUGCc -3'
miRNA:   3'- uCCUGg---GGCCAGGAC-GCUUUU-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 49305 0.67 0.949742
Target:  5'- cGGACgCCaCGGcCCUGauaGAGAGC-CACc -3'
miRNA:   3'- uCCUG-GG-GCCaGGACg--CUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 145205 0.67 0.947247
Target:  5'- -cGACCCCGGg-CUGCGGGAcgaggaccagugccgGCGCGa -3'
miRNA:   3'- ucCUGGGGCCagGACGCUUU---------------UGUGUg -5'
9286 5' -55.5 NC_002512.2 + 30295 0.67 0.945539
Target:  5'- gAGGcCCCCGcGUCCgacgacccGCGGuacCGCACg -3'
miRNA:   3'- -UCCuGGGGC-CAGGa-------CGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 214338 0.67 0.945539
Target:  5'- -cGACUCCGGccUCCUcaGCGAGAGCcagaGCGCc -3'
miRNA:   3'- ucCUGGGGCC--AGGA--CGCUUUUG----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 51666 0.67 0.945539
Target:  5'- cGGaGACCCUGGaCCUGUGGcgcuCACAg -3'
miRNA:   3'- -UC-CUGGGGCCaGGACGCUuuu-GUGUg -5'
9286 5' -55.5 NC_002512.2 + 188600 0.67 0.945539
Target:  5'- cAGGuCgUCGaGUCCUGCGGcaaAAGCACGa -3'
miRNA:   3'- -UCCuGgGGC-CAGGACGCU---UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 35540 0.67 0.945539
Target:  5'- gAGGACCCCucccUCgUGCGcGAcCACGCa -3'
miRNA:   3'- -UCCUGGGGcc--AGgACGCuUUuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 106392 0.67 0.945539
Target:  5'- gGGGGccgagcaccCCCUGGaCCcGCGAGAcGCACACc -3'
miRNA:   3'- -UCCU---------GGGGCCaGGaCGCUUU-UGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 91688 0.67 0.945539
Target:  5'- -cGGCCCCGacgguaggauGUCC-GCGAu-GCACACg -3'
miRNA:   3'- ucCUGGGGC----------CAGGaCGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 130321 0.67 0.941112
Target:  5'- -cGGCUUCGGUCCgaaGCGGuu-CACGCg -3'
miRNA:   3'- ucCUGGGGCCAGGa--CGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 80692 0.67 0.941112
Target:  5'- gGGGGCgagCgGcGUCCgggggGCGAGGGCGCGCg -3'
miRNA:   3'- -UCCUGg--GgC-CAGGa----CGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 106995 0.67 0.941112
Target:  5'- cGGGACgCCCGGgCCggggucgGCcGAGAGCcggGCGCg -3'
miRNA:   3'- -UCCUG-GGGCCaGGa------CG-CUUUUG---UGUG- -5'
9286 5' -55.5 NC_002512.2 + 96759 0.67 0.936458
Target:  5'- cGGGGCCCC-GUCCgaGCGGcgccaugcaGAucuCACACg -3'
miRNA:   3'- -UCCUGGGGcCAGGa-CGCU---------UUu--GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 48427 0.67 0.936458
Target:  5'- cGGACUucgaCCGGaUCCUGaCGAAGACgACGg -3'
miRNA:   3'- uCCUGG----GGCC-AGGAC-GCUUUUG-UGUg -5'
9286 5' -55.5 NC_002512.2 + 69941 0.67 0.936458
Target:  5'- uAGGuCUCCGGUCCggccacCGggGACguaucGCACa -3'
miRNA:   3'- -UCCuGGGGCCAGGac----GCuuUUG-----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 215639 0.67 0.936458
Target:  5'- gAGGAgaUCGGUCCUGCguucccGAAAGCuCACc -3'
miRNA:   3'- -UCCUggGGCCAGGACG------CUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 124284 0.67 0.936458
Target:  5'- cGGACCCgGG-CgUGCGGcucGAcCGCGCg -3'
miRNA:   3'- uCCUGGGgCCaGgACGCU---UUuGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.