miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 56255 0.7 0.823596
Target:  5'- cGGACCCgGGguucgccgCCgcgGCGGAGGCGCu- -3'
miRNA:   3'- uCCUGGGgCCa-------GGa--CGCUUUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 60077 0.68 0.921127
Target:  5'- cGGugCCCGuGUUccgaCUGCGGAAcgGCACg -3'
miRNA:   3'- uCCugGGGC-CAG----GACGCUUUugUGUG- -5'
9286 5' -55.5 NC_002512.2 + 60226 0.67 0.949742
Target:  5'- cGGACgcagCUGGUCCUGgCGGAGAuCAUGCc -3'
miRNA:   3'- uCCUGg---GGCCAGGAC-GCUUUU-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 64227 0.78 0.391003
Target:  5'- gAGGACCUCGG-CCUGCGGGAAgGCc- -3'
miRNA:   3'- -UCCUGGGGCCaGGACGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 64936 0.7 0.843096
Target:  5'- cGGGGuccagcacguacUCCCGGUCCUcgaagaacauacgcgGCGAGAGCucGCACu -3'
miRNA:   3'- -UCCU------------GGGGCCAGGA---------------CGCUUUUG--UGUG- -5'
9286 5' -55.5 NC_002512.2 + 69941 0.67 0.936458
Target:  5'- uAGGuCUCCGGUCCggccacCGggGACguaucGCACa -3'
miRNA:   3'- -UCCuGGGGCCAGGac----GCuuUUG-----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 72537 0.68 0.915558
Target:  5'- cGGACCUCGGcggCCagGCG-GAACACGg -3'
miRNA:   3'- uCCUGGGGCCa--GGa-CGCuUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 75579 0.66 0.961035
Target:  5'- cGGAUCCCGGUCCgccacccuCGGAucGugAUGCg -3'
miRNA:   3'- uCCUGGGGCCAGGac------GCUU--UugUGUG- -5'
9286 5' -55.5 NC_002512.2 + 77708 1.1 0.003998
Target:  5'- gAGGACCCCGGUCCUGCGAAAACACACg -3'
miRNA:   3'- -UCCUGGGGCCAGGACGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 80500 0.69 0.870339
Target:  5'- gAGGAgCCgGaGUCCUGCGucccCGCGCc -3'
miRNA:   3'- -UCCUgGGgC-CAGGACGCuuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 80692 0.67 0.941112
Target:  5'- gGGGGCgagCgGcGUCCgggggGCGAGGGCGCGCg -3'
miRNA:   3'- -UCCUGg--GgC-CAGGa----CGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 81287 0.68 0.912108
Target:  5'- gGGGGCggUCCGGgCCUGCGggGuggguuuguuggccaGCugGCg -3'
miRNA:   3'- -UCCUG--GGGCCaGGACGCuuU---------------UGugUG- -5'
9286 5' -55.5 NC_002512.2 + 82117 0.69 0.863027
Target:  5'- gAGGcACUCCaGGUCCUcGCGGcuGAGCGCGu -3'
miRNA:   3'- -UCC-UGGGG-CCAGGA-CGCU--UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 84168 0.69 0.863027
Target:  5'- cGGGAggUCCCGGUCCagguucgGCGGGAcCAgGCg -3'
miRNA:   3'- -UCCU--GGGGCCAGGa------CGCUUUuGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 86244 0.68 0.921127
Target:  5'- gAGGACCCgGGggagagggCCgagGCGggGAgGgACg -3'
miRNA:   3'- -UCCUGGGgCCa-------GGa--CGCuuUUgUgUG- -5'
9286 5' -55.5 NC_002512.2 + 89068 0.66 0.957487
Target:  5'- cGGACgUCGGUCuguCUGCGGGuucCGCAUa -3'
miRNA:   3'- uCCUGgGGCCAG---GACGCUUuu-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 90124 0.71 0.770882
Target:  5'- cGGGCgCCCGGUgC-GCGAGGGC-CGCg -3'
miRNA:   3'- uCCUG-GGGCCAgGaCGCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 91688 0.67 0.945539
Target:  5'- -cGGCCCCGacgguaggauGUCC-GCGAu-GCACACg -3'
miRNA:   3'- ucCUGGGGC----------CAGGaCGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 96575 0.68 0.90127
Target:  5'- uAGGAUCCUccucccgccucggGGUCCUcuggggaccggagcGCGGAGACGCGg -3'
miRNA:   3'- -UCCUGGGG-------------CCAGGA--------------CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 96759 0.67 0.936458
Target:  5'- cGGGGCCCC-GUCCgaGCGGcgccaugcaGAucuCACACg -3'
miRNA:   3'- -UCCUGGGGcCAGGa-CGCU---------UUu--GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.