miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 24583 0.66 0.964373
Target:  5'- ---cUCCCGGUCCgucgacGCGggGAC-CGCu -3'
miRNA:   3'- uccuGGGGCCAGGa-----CGCuuUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 24843 0.66 0.964373
Target:  5'- cGGGCCCgCGG-CCggucgGCGGcGGACGCGg -3'
miRNA:   3'- uCCUGGG-GCCaGGa----CGCU-UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 27605 0.77 0.460233
Target:  5'- cGGcGCCCCGGUCCcacagcGCGGAGAgACGCu -3'
miRNA:   3'- uCC-UGGGGCCAGGa-----CGCUUUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 27659 0.66 0.959993
Target:  5'- gAGGucggauggagacgaACCCCguaucccgcgGGUCCgucgGCGAuccgGAACGCGCg -3'
miRNA:   3'- -UCC--------------UGGGG----------CCAGGa---CGCU----UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 30295 0.67 0.945539
Target:  5'- gAGGcCCCCGcGUCCgacgacccGCGGuacCGCACg -3'
miRNA:   3'- -UCCuGGGGC-CAGGa-------CGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 34983 0.68 0.897496
Target:  5'- uGGGCCUCGcGUCCcGCGGAGGagaaggGCACc -3'
miRNA:   3'- uCCUGGGGC-CAGGaCGCUUUUg-----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 35540 0.67 0.945539
Target:  5'- gAGGACCCCucccUCgUGCGcGAcCACGCa -3'
miRNA:   3'- -UCCUGGGGcc--AGgACGCuUUuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 37375 0.66 0.967505
Target:  5'- cGGACCCCauGUCCUcCGAGAAgACc- -3'
miRNA:   3'- uCCUGGGGc-CAGGAcGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 38875 0.69 0.855515
Target:  5'- cAGGcACCUCGGUCCgcGCGGGcAGUACGCg -3'
miRNA:   3'- -UCC-UGGGGCCAGGa-CGCUU-UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 40310 0.7 0.84781
Target:  5'- gAGGACCCggCGGcCCgGuCGGAAGCAgACg -3'
miRNA:   3'- -UCCUGGG--GCCaGGaC-GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 44426 0.71 0.797884
Target:  5'- cGGAUCCCGGUCuCUGC----GCACGu -3'
miRNA:   3'- uCCUGGGGCCAG-GACGcuuuUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 44478 0.66 0.964373
Target:  5'- aGGGcGCCCCGGggCCggGCGGAGAagACGg -3'
miRNA:   3'- -UCC-UGGGGCCa-GGa-CGCUUUUg-UGUg -5'
9286 5' -55.5 NC_002512.2 + 44958 0.7 0.814332
Target:  5'- cGGACUccgaacaCCGGUCCUcgGCGAAGGgGCAg -3'
miRNA:   3'- uCCUGG-------GGCCAGGA--CGCUUUUgUGUg -5'
9286 5' -55.5 NC_002512.2 + 48209 0.69 0.863027
Target:  5'- cGGGAUCCCGG-CC-GCGggG-CGCGa -3'
miRNA:   3'- -UCCUGGGGCCaGGaCGCuuUuGUGUg -5'
9286 5' -55.5 NC_002512.2 + 48427 0.67 0.936458
Target:  5'- cGGACUucgaCCGGaUCCUGaCGAAGACgACGg -3'
miRNA:   3'- uCCUGG----GGCC-AGGAC-GCUUUUG-UGUg -5'
9286 5' -55.5 NC_002512.2 + 49305 0.67 0.949742
Target:  5'- cGGACgCCaCGGcCCUGauaGAGAGC-CACc -3'
miRNA:   3'- uCCUG-GG-GCCaGGACg--CUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 51036 0.66 0.961035
Target:  5'- cGGACCacgcgcaCGuGUgCCUGCGAcccGAGCACGu -3'
miRNA:   3'- uCCUGGg------GC-CA-GGACGCU---UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 51666 0.67 0.945539
Target:  5'- cGGaGACCCUGGaCCUGUGGcgcuCACAg -3'
miRNA:   3'- -UC-CUGGGGCCaGGACGCUuuu-GUGUg -5'
9286 5' -55.5 NC_002512.2 + 52784 0.7 0.84781
Target:  5'- cGGACCuCCuGGUC--GCGGAGACGCAg -3'
miRNA:   3'- uCCUGG-GG-CCAGgaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 55478 0.78 0.407671
Target:  5'- cGGaGGCCCCGGcgCC-GCGGGAACGCGCc -3'
miRNA:   3'- -UC-CUGGGGCCa-GGaCGCUUUUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.