miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 3388 0.7 0.839917
Target:  5'- cGGGGCCCacaGGUCCccaGAGGAC-CACg -3'
miRNA:   3'- -UCCUGGGg--CCAGGacgCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 3588 0.68 0.909763
Target:  5'- cAGG-CCCCGGgggUCU-CGggGACAgGCg -3'
miRNA:   3'- -UCCuGGGGCCa--GGAcGCuuUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 4625 0.66 0.961035
Target:  5'- gAGGACgCCC--UCCUgGCGGAGAaggaGCACg -3'
miRNA:   3'- -UCCUG-GGGccAGGA-CGCUUUUg---UGUG- -5'
9286 5' -55.5 NC_002512.2 + 5362 0.69 0.877447
Target:  5'- cGGGACCUgUGGUCCUcCGGcucuGGCGCACc -3'
miRNA:   3'- -UCCUGGG-GCCAGGAcGCUu---UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 6814 0.66 0.961035
Target:  5'- cGGACCCgGGUCUcggccacggugGCGAccAGGgGCACc -3'
miRNA:   3'- uCCUGGGgCCAGGa----------CGCU--UUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 8555 0.68 0.897496
Target:  5'- ---uCCCgCGGUCgaGCGAAGGCACGa -3'
miRNA:   3'- uccuGGG-GCCAGgaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 9305 0.68 0.921127
Target:  5'- cGGAUCCCGGcacUCCaucggGCG---GCGCACg -3'
miRNA:   3'- uCCUGGGGCC---AGGa----CGCuuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 10909 0.66 0.962058
Target:  5'- cGGACCCCGGgccggaccucccagCCgGCGAcggaggggucgacGAGgACGCc -3'
miRNA:   3'- uCCUGGGGCCa-------------GGaCGCU-------------UUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 11336 0.68 0.909763
Target:  5'- cGGACgCCGGcgggagGCGAGAGCGCAa -3'
miRNA:   3'- uCCUGgGGCCagga--CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 11429 0.72 0.713913
Target:  5'- -uGACCgCGGUCC-GCGggGACGcCGCg -3'
miRNA:   3'- ucCUGGgGCCAGGaCGCuuUUGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 11940 0.66 0.953724
Target:  5'- uAGGcagucguuccccGCCCCGGUCCccaCGAAGACGgggcCACc -3'
miRNA:   3'- -UCC------------UGGGGCCAGGac-GCUUUUGU----GUG- -5'
9286 5' -55.5 NC_002512.2 + 14767 0.7 0.839917
Target:  5'- cGGACCCCGG-CCguucugGCGGucGGC-CGCg -3'
miRNA:   3'- uCCUGGGGCCaGGa-----CGCUu-UUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 14936 0.66 0.967505
Target:  5'- cGGACCCCGugcGUCC-GCGGccacgggaggacGAAC-CGCg -3'
miRNA:   3'- uCCUGGGGC---CAGGaCGCU------------UUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 15106 0.69 0.875337
Target:  5'- gGGGACCCggaGGgcgaccggcgccggaCUGCGAcgGCACGCu -3'
miRNA:   3'- -UCCUGGGg--CCag-------------GACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 16884 0.69 0.870339
Target:  5'- gAGGGCCCCGGgcccgacggCCgcgGCGAcgauGAGguCGCa -3'
miRNA:   3'- -UCCUGGGGCCa--------GGa--CGCU----UUUguGUG- -5'
9286 5' -55.5 NC_002512.2 + 17903 0.66 0.959993
Target:  5'- cGGcGGCCCCGaggacgacggccgcGUCCUGaCGGAAGCAg-- -3'
miRNA:   3'- -UC-CUGGGGC--------------CAGGAC-GCUUUUGUgug -5'
9286 5' -55.5 NC_002512.2 + 19906 0.67 0.936458
Target:  5'- gAGGaACCCCGGgaagCCguugGCGAccuugaGGACcCGCg -3'
miRNA:   3'- -UCC-UGGGGCCa---GGa---CGCU------UUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 21217 0.66 0.964373
Target:  5'- cGGcCCCCGGgacgCCgcccgggGCGGAGACGgGg -3'
miRNA:   3'- uCCuGGGGCCa---GGa------CGCUUUUGUgUg -5'
9286 5' -55.5 NC_002512.2 + 22910 0.67 0.936458
Target:  5'- cGGGcAUCCCGGgcggcuucuUCCUGCuGAccucgcugaaGGGCACGCg -3'
miRNA:   3'- -UCC-UGGGGCC---------AGGACG-CU----------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 23091 0.68 0.897496
Target:  5'- cGGAUCCCGGaguucggCgUGCGGAugauCGCGCu -3'
miRNA:   3'- uCCUGGGGCCa------GgACGCUUuu--GUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.