miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 77708 1.1 0.003998
Target:  5'- gAGGACCCCGGUCCUGCGAAAACACACg -3'
miRNA:   3'- -UCCUGGGGCCAGGACGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 84168 0.69 0.863027
Target:  5'- cGGGAggUCCCGGUCCagguucgGCGGGAcCAgGCg -3'
miRNA:   3'- -UCCU--GGGGCCAGGa------CGCUUUuGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 82117 0.69 0.863027
Target:  5'- gAGGcACUCCaGGUCCUcGCGGcuGAGCGCGu -3'
miRNA:   3'- -UCC-UGGGG-CCAGGA-CGCU--UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 37375 0.66 0.967505
Target:  5'- cGGACCCCauGUCCUcCGAGAAgACc- -3'
miRNA:   3'- uCCUGGGGc-CAGGAcGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 119193 0.73 0.694297
Target:  5'- -uGGCCCUGGcCCUGCGGcgGCuGCGCg -3'
miRNA:   3'- ucCUGGGGCCaGGACGCUuuUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 11429 0.72 0.713913
Target:  5'- -uGACCgCGGUCC-GCGggGACGcCGCg -3'
miRNA:   3'- ucCUGGgGCCAGGaCGCuuUUGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 121772 0.71 0.770882
Target:  5'- cGGGACCgCGGaccgCCgagGCGggGACGC-Cg -3'
miRNA:   3'- -UCCUGGgGCCa---GGa--CGCuuUUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 44958 0.7 0.814332
Target:  5'- cGGACUccgaacaCCGGUCCUcgGCGAAGGgGCAg -3'
miRNA:   3'- uCCUGG-------GGCCAGGA--CGCUUUUgUGUg -5'
9286 5' -55.5 NC_002512.2 + 14767 0.7 0.839917
Target:  5'- cGGACCCCGG-CCguucugGCGGucGGC-CGCg -3'
miRNA:   3'- uCCUGGGGCCaGGa-----CGCUu-UUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 152472 0.69 0.855515
Target:  5'- gAGGcguCCCgGGUCCUGUGAcgcGACgGCGCc -3'
miRNA:   3'- -UCCu--GGGgCCAGGACGCUu--UUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 40310 0.7 0.84781
Target:  5'- gAGGACCCggCGGcCCgGuCGGAAGCAgACg -3'
miRNA:   3'- -UCCUGGG--GCCaGGaC-GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 155302 0.7 0.839917
Target:  5'- gAGGGCCCCGG-CCU-CGA--GCAC-Ca -3'
miRNA:   3'- -UCCUGGGGCCaGGAcGCUuuUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 64227 0.78 0.391003
Target:  5'- gAGGACCUCGG-CCUGCGGGAAgGCc- -3'
miRNA:   3'- -UCCUGGGGCCaGGACGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 52784 0.7 0.84781
Target:  5'- cGGACCuCCuGGUC--GCGGAGACGCAg -3'
miRNA:   3'- uCCUGG-GG-CCAGgaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 55478 0.78 0.407671
Target:  5'- cGGaGGCCCCGGcgCC-GCGGGAACGCGCc -3'
miRNA:   3'- -UC-CUGGGGCCa-GGaCGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 56255 0.7 0.823596
Target:  5'- cGGACCCgGGguucgccgCCgcgGCGGAGGCGCu- -3'
miRNA:   3'- uCCUGGGgCCa-------GGa--CGCUUUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 38875 0.69 0.855515
Target:  5'- cAGGcACCUCGGUCCgcGCGGGcAGUACGCg -3'
miRNA:   3'- -UCC-UGGGGCCAGGa-CGCUU-UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 48209 0.69 0.863027
Target:  5'- cGGGAUCCCGG-CC-GCGggG-CGCGa -3'
miRNA:   3'- -UCCUGGGGCCaGGaCGCuuUuGUGUg -5'
9286 5' -55.5 NC_002512.2 + 27605 0.77 0.460233
Target:  5'- cGGcGCCCCGGUCCcacagcGCGGAGAgACGCu -3'
miRNA:   3'- uCC-UGGGGCCAGGa-----CGCUUUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 90124 0.71 0.770882
Target:  5'- cGGGCgCCCGGUgC-GCGAGGGC-CGCg -3'
miRNA:   3'- uCCUG-GGGCCAgGaCGCUUUUGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.