miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 77708 1.1 0.003998
Target:  5'- gAGGACCCCGGUCCUGCGAAAACACACg -3'
miRNA:   3'- -UCCUGGGGCCAGGACGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 64227 0.78 0.391003
Target:  5'- gAGGACCUCGG-CCUGCGGGAAgGCc- -3'
miRNA:   3'- -UCCUGGGGCCaGGACGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 55478 0.78 0.407671
Target:  5'- cGGaGGCCCCGGcgCC-GCGGGAACGCGCc -3'
miRNA:   3'- -UC-CUGGGGCCa-GGaCGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 27605 0.77 0.460233
Target:  5'- cGGcGCCCCGGUCCcacagcGCGGAGAgACGCu -3'
miRNA:   3'- uCC-UGGGGCCAGGa-----CGCUUUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152209 0.76 0.535436
Target:  5'- uGGACCCCGGUCCUGgcCGGuucuAGACAUu- -3'
miRNA:   3'- uCCUGGGGCCAGGAC--GCU----UUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 191020 0.75 0.545162
Target:  5'- cGGACCgaGGUgCCUGCGAGgcggggcgcGGCGCACg -3'
miRNA:   3'- uCCUGGggCCA-GGACGCUU---------UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 137225 0.74 0.644532
Target:  5'- cGGAucucuCCCCGGUCCcGaCGAGGACACcgGCg -3'
miRNA:   3'- uCCU-----GGGGCCAGGaC-GCUUUUGUG--UG- -5'
9286 5' -55.5 NC_002512.2 + 128865 0.73 0.68342
Target:  5'- cGGGCCCUGGUgCUGCGccugcugagggacGAGACGgGCc -3'
miRNA:   3'- uCCUGGGGCCAgGACGC-------------UUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 224369 0.73 0.694297
Target:  5'- gGGaGACCUCGGUCCgggaccucGCGAccccggcgcGGACGCGCg -3'
miRNA:   3'- -UC-CUGGGGCCAGGa-------CGCU---------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 119193 0.73 0.694297
Target:  5'- -uGGCCCUGGcCCUGCGGcgGCuGCGCg -3'
miRNA:   3'- ucCUGGGGCCaGGACGCUuuUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 208244 0.72 0.704134
Target:  5'- gAGGAgaaggCCCGGUCCUGgGAAcGCuACACc -3'
miRNA:   3'- -UCCUg----GGGCCAGGACgCUUuUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 11429 0.72 0.713913
Target:  5'- -uGACCgCGGUCC-GCGggGACGcCGCg -3'
miRNA:   3'- ucCUGGgGCCAGGaCGCuuUUGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 152574 0.72 0.723625
Target:  5'- cGaGACCCCGucgCCUcGCGAAacGACACGCg -3'
miRNA:   3'- uC-CUGGGGCca-GGA-CGCUU--UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 183924 0.72 0.730379
Target:  5'- cGGGACCCUucagcggcucggcuGGUUCUGCucccGGGACGCGCg -3'
miRNA:   3'- -UCCUGGGG--------------CCAGGACGc---UUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 121772 0.71 0.770882
Target:  5'- cGGGACCgCGGaccgCCgagGCGggGACGC-Cg -3'
miRNA:   3'- -UCCUGGgGCCa---GGa--CGCuuUUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 90124 0.71 0.770882
Target:  5'- cGGGCgCCCGGUgC-GCGAGGGC-CGCg -3'
miRNA:   3'- uCCUG-GGGCCAgGaCGCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 102254 0.71 0.786329
Target:  5'- cGGGCCCgGGUCCggGCGucGuccaucucggcucgGCGCGCg -3'
miRNA:   3'- uCCUGGGgCCAGGa-CGCuuU--------------UGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 44426 0.71 0.797884
Target:  5'- cGGAUCCCGGUCuCUGC----GCACGu -3'
miRNA:   3'- uCCUGGGGCCAG-GACGcuuuUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 162139 0.71 0.797884
Target:  5'- -cGACCCCGG-CUcGCGAGgccGGCACGCc -3'
miRNA:   3'- ucCUGGGGCCaGGaCGCUU---UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 44958 0.7 0.814332
Target:  5'- cGGACUccgaacaCCGGUCCUcgGCGAAGGgGCAg -3'
miRNA:   3'- uCCUGG-------GGCCAGGA--CGCUUUUgUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.