miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 211336 0.7 0.815182
Target:  5'- cGGGCCCgGG-CgCUG-GggGACGCGCg -3'
miRNA:   3'- uCCUGGGgCCaG-GACgCuuUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 56255 0.7 0.823596
Target:  5'- cGGACCCgGGguucgccgCCgcgGCGGAGGCGCu- -3'
miRNA:   3'- uCCUGGGgCCa-------GGa--CGCUUUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 155302 0.7 0.839917
Target:  5'- gAGGGCCCCGG-CCU-CGA--GCAC-Ca -3'
miRNA:   3'- -UCCUGGGGCCaGGAcGCUuuUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 14767 0.7 0.839917
Target:  5'- cGGACCCCGG-CCguucugGCGGucGGC-CGCg -3'
miRNA:   3'- uCCUGGGGCCaGGa-----CGCUu-UUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 3388 0.7 0.839917
Target:  5'- cGGGGCCCacaGGUCCccaGAGGAC-CACg -3'
miRNA:   3'- -UCCUGGGg--CCAGGacgCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 64936 0.7 0.843096
Target:  5'- cGGGGuccagcacguacUCCCGGUCCUcgaagaacauacgcgGCGAGAGCucGCACu -3'
miRNA:   3'- -UCCU------------GGGGCCAGGA---------------CGCUUUUG--UGUG- -5'
9286 5' -55.5 NC_002512.2 + 52784 0.7 0.84781
Target:  5'- cGGACCuCCuGGUC--GCGGAGACGCAg -3'
miRNA:   3'- uCCUGG-GG-CCAGgaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 40310 0.7 0.84781
Target:  5'- gAGGACCCggCGGcCCgGuCGGAAGCAgACg -3'
miRNA:   3'- -UCCUGGG--GCCaGGaC-GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 149394 0.7 0.84781
Target:  5'- cAGGACUCCGGcUCCUcgacgggccGCGAGggGAC-CGCg -3'
miRNA:   3'- -UCCUGGGGCC-AGGA---------CGCUU--UUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 142639 0.7 0.84781
Target:  5'- cGGaGACCCCucgcaGGUCagguugaUGUGGAAAUACACg -3'
miRNA:   3'- -UC-CUGGGG-----CCAGg------ACGCUUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 38875 0.69 0.855515
Target:  5'- cAGGcACCUCGGUCCgcGCGGGcAGUACGCg -3'
miRNA:   3'- -UCC-UGGGGCCAGGa-CGCUU-UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152472 0.69 0.855515
Target:  5'- gAGGcguCCCgGGUCCUGUGAcgcGACgGCGCc -3'
miRNA:   3'- -UCCu--GGGgCCAGGACGCUu--UUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 122617 0.69 0.855515
Target:  5'- cGGcGGCCUCGGUCCggGUGAAcGCGgACc -3'
miRNA:   3'- -UC-CUGGGGCCAGGa-CGCUUuUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 82117 0.69 0.863027
Target:  5'- gAGGcACUCCaGGUCCUcGCGGcuGAGCGCGu -3'
miRNA:   3'- -UCC-UGGGG-CCAGGA-CGCU--UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 48209 0.69 0.863027
Target:  5'- cGGGAUCCCGG-CC-GCGggG-CGCGa -3'
miRNA:   3'- -UCCUGGGGCCaGGaCGCuuUuGUGUg -5'
9286 5' -55.5 NC_002512.2 + 84168 0.69 0.863027
Target:  5'- cGGGAggUCCCGGUCCagguucgGCGGGAcCAgGCg -3'
miRNA:   3'- -UCCU--GGGGCCAGGa------CGCUUUuGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 227978 0.69 0.868167
Target:  5'- gAGGGCCCCGGcgCCgaggGcCGAGGGCcggagccggacgggACGCg -3'
miRNA:   3'- -UCCUGGGGCCa-GGa---C-GCUUUUG--------------UGUG- -5'
9286 5' -55.5 NC_002512.2 + 218593 0.69 0.869617
Target:  5'- gAGGucuCCCCGGggucucgCCcGCGGAcucgaagGACGCGCg -3'
miRNA:   3'- -UCCu--GGGGCCa------GGaCGCUU-------UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 196390 0.69 0.870339
Target:  5'- cGGGACgCCgcgGGUCUggcGCGggGACGCGg -3'
miRNA:   3'- -UCCUGgGG---CCAGGa--CGCuuUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 141352 0.69 0.870339
Target:  5'- -cGACCCUccacccGUCCUGCGAAuccacGAUACACu -3'
miRNA:   3'- ucCUGGGGc-----CAGGACGCUU-----UUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.