Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9286 | 5' | -55.5 | NC_002512.2 | + | 4625 | 0.66 | 0.961035 |
Target: 5'- gAGGACgCCC--UCCUgGCGGAGAaggaGCACg -3' miRNA: 3'- -UCCUG-GGGccAGGA-CGCUUUUg---UGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 190362 | 0.66 | 0.961035 |
Target: 5'- gGGGGCgucggCCCGGUCCUGUaccuGCuCACc -3' miRNA: 3'- -UCCUG-----GGGCCAGGACGcuuuUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 213680 | 0.66 | 0.961035 |
Target: 5'- gGGGAgCCCGGcgucgCCcGCGGuccucGAACugGCu -3' miRNA: 3'- -UCCUgGGGCCa----GGaCGCU-----UUUGugUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 220596 | 0.66 | 0.961035 |
Target: 5'- cGGGA-UCCGGUCgUGCGcGAGCugGu -3' miRNA: 3'- -UCCUgGGGCCAGgACGCuUUUGugUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 103737 | 0.66 | 0.961035 |
Target: 5'- cGGACCgCGGcgaUCCUGaaGAGGCGCuACg -3' miRNA: 3'- uCCUGGgGCC---AGGACgcUUUUGUG-UG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 181023 | 0.66 | 0.961035 |
Target: 5'- gAGGGaggCCCGcGUCCUGggcaGGAGGcCGCACa -3' miRNA: 3'- -UCCUg--GGGC-CAGGACg---CUUUU-GUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 152705 | 0.66 | 0.964373 |
Target: 5'- -cGuCCCCGGUCggggUGCGGcgggcaggGGACACGCa -3' miRNA: 3'- ucCuGGGGCCAGg---ACGCU--------UUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 124685 | 0.66 | 0.967505 |
Target: 5'- cGGGACCUCGGgaUCCggGC----GCACGCc -3' miRNA: 3'- -UCCUGGGGCC--AGGa-CGcuuuUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 218297 | 0.66 | 0.967505 |
Target: 5'- gGGGuCCCCGGcCCUG-GGcgGC-CGCu -3' miRNA: 3'- -UCCuGGGGCCaGGACgCUuuUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 75579 | 0.66 | 0.961035 |
Target: 5'- cGGAUCCCGGUCCgccacccuCGGAucGugAUGCg -3' miRNA: 3'- uCCUGGGGCCAGGac------GCUU--UugUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 124181 | 0.66 | 0.957487 |
Target: 5'- cGGACCCCGaG-CgCgGCGuucGGCACGCa -3' miRNA: 3'- uCCUGGGGC-CaG-GaCGCuu-UUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 198741 | 0.66 | 0.953724 |
Target: 5'- cGGGCCa-GGUCC-GCGAAGACGg-- -3' miRNA: 3'- uCCUGGggCCAGGaCGCUUUUGUgug -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 11940 | 0.66 | 0.953724 |
Target: 5'- uAGGcagucguuccccGCCCCGGUCCccaCGAAGACGgggcCACc -3' miRNA: 3'- -UCC------------UGGGGCCAGGac-GCUUUUGU----GUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 17903 | 0.66 | 0.959993 |
Target: 5'- cGGcGGCCCCGaggacgacggccgcGUCCUGaCGGAAGCAg-- -3' miRNA: 3'- -UC-CUGGGGC--------------CAGGAC-GCUUUUGUgug -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 133589 | 0.66 | 0.964373 |
Target: 5'- gGGGACCcgagcgggCCGGccUCCUGCGGAccUACGg -3' miRNA: 3'- -UCCUGG--------GGCC--AGGACGCUUuuGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 203712 | 0.66 | 0.953724 |
Target: 5'- cGGucgcCCgCCGG-CCUGCGAcacGGAgACACg -3' miRNA: 3'- uCCu---GG-GGCCaGGACGCU---UUUgUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 207087 | 0.66 | 0.953724 |
Target: 5'- uGGAUCCCGccCUUGUGGuagcGGGCGCGCa -3' miRNA: 3'- uCCUGGGGCcaGGACGCU----UUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 222798 | 0.66 | 0.953724 |
Target: 5'- cAGGACCgCUGGaggaaCUGgGAGAGC-CACg -3' miRNA: 3'- -UCCUGG-GGCCag---GACgCUUUUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 226005 | 0.66 | 0.967505 |
Target: 5'- cGGGACgCCGGUgCUGacucCGAGGACG-ACg -3' miRNA: 3'- -UCCUGgGGCCAgGAC----GCUUUUGUgUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 49305 | 0.67 | 0.949742 |
Target: 5'- cGGACgCCaCGGcCCUGauaGAGAGC-CACc -3' miRNA: 3'- uCCUG-GG-GCCaGGACg--CUUUUGuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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