miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 226005 0.66 0.967505
Target:  5'- cGGGACgCCGGUgCUGacucCGAGGACG-ACg -3'
miRNA:   3'- -UCCUGgGGCCAgGAC----GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 222798 0.66 0.953724
Target:  5'- cAGGACCgCUGGaggaaCUGgGAGAGC-CACg -3'
miRNA:   3'- -UCCUGG-GGCCag---GACgCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 207087 0.66 0.953724
Target:  5'- uGGAUCCCGccCUUGUGGuagcGGGCGCGCa -3'
miRNA:   3'- uCCUGGGGCcaGGACGCU----UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 203712 0.66 0.953724
Target:  5'- cGGucgcCCgCCGG-CCUGCGAcacGGAgACACg -3'
miRNA:   3'- uCCu---GG-GGCCaGGACGCU---UUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 105528 0.66 0.952552
Target:  5'- uGGACCCCGGcgCCcggggGuCGAAGAUcagguacagccgcaGCACg -3'
miRNA:   3'- uCCUGGGGCCa-GGa----C-GCUUUUG--------------UGUG- -5'
9286 5' -55.5 NC_002512.2 + 135173 0.66 0.953724
Target:  5'- uGGAUCCUGGUCCgucacgacUGCGAGuuC-UACg -3'
miRNA:   3'- uCCUGGGGCCAGG--------ACGCUUuuGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 11940 0.66 0.953724
Target:  5'- uAGGcagucguuccccGCCCCGGUCCccaCGAAGACGgggcCACc -3'
miRNA:   3'- -UCC------------UGGGGCCAGGac-GCUUUUGU----GUG- -5'
9286 5' -55.5 NC_002512.2 + 116943 0.66 0.953724
Target:  5'- -cGA-CCCGGUCC-GCGGGcuCGCGCg -3'
miRNA:   3'- ucCUgGGGCCAGGaCGCUUuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 98152 0.66 0.957487
Target:  5'- cGGACaCCGGUUCgGCGGuccCGCGCc -3'
miRNA:   3'- uCCUGgGGCCAGGaCGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 198741 0.66 0.953724
Target:  5'- cGGGCCa-GGUCC-GCGAAGACGg-- -3'
miRNA:   3'- uCCUGGggCCAGGaCGCUUUUGUgug -5'
9286 5' -55.5 NC_002512.2 + 124181 0.66 0.957487
Target:  5'- cGGACCCCGaG-CgCgGCGuucGGCACGCa -3'
miRNA:   3'- uCCUGGGGC-CaG-GaCGCuu-UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 75579 0.66 0.961035
Target:  5'- cGGAUCCCGGUCCgccacccuCGGAucGugAUGCg -3'
miRNA:   3'- uCCUGGGGCCAGGac------GCUU--UugUGUG- -5'
9286 5' -55.5 NC_002512.2 + 218297 0.66 0.967505
Target:  5'- gGGGuCCCCGGcCCUG-GGcgGC-CGCu -3'
miRNA:   3'- -UCCuGGGGCCaGGACgCUuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 124685 0.66 0.967505
Target:  5'- cGGGACCUCGGgaUCCggGC----GCACGCc -3'
miRNA:   3'- -UCCUGGGGCC--AGGa-CGcuuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152705 0.66 0.964373
Target:  5'- -cGuCCCCGGUCggggUGCGGcgggcaggGGACACGCa -3'
miRNA:   3'- ucCuGGGGCCAGg---ACGCU--------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 181023 0.66 0.961035
Target:  5'- gAGGGaggCCCGcGUCCUGggcaGGAGGcCGCACa -3'
miRNA:   3'- -UCCUg--GGGC-CAGGACg---CUUUU-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 103737 0.66 0.961035
Target:  5'- cGGACCgCGGcgaUCCUGaaGAGGCGCuACg -3'
miRNA:   3'- uCCUGGgGCC---AGGACgcUUUUGUG-UG- -5'
9286 5' -55.5 NC_002512.2 + 220596 0.66 0.961035
Target:  5'- cGGGA-UCCGGUCgUGCGcGAGCugGu -3'
miRNA:   3'- -UCCUgGGGCCAGgACGCuUUUGugUg -5'
9286 5' -55.5 NC_002512.2 + 213680 0.66 0.961035
Target:  5'- gGGGAgCCCGGcgucgCCcGCGGuccucGAACugGCu -3'
miRNA:   3'- -UCCUgGGGCCa----GGaCGCU-----UUUGugUG- -5'
9286 5' -55.5 NC_002512.2 + 190362 0.66 0.961035
Target:  5'- gGGGGCgucggCCCGGUCCUGUaccuGCuCACc -3'
miRNA:   3'- -UCCUG-----GGGCCAGGACGcuuuUGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.