Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9286 | 5' | -55.5 | NC_002512.2 | + | 77708 | 1.1 | 0.003998 |
Target: 5'- gAGGACCCCGGUCCUGCGAAAACACACg -3' miRNA: 3'- -UCCUGGGGCCAGGACGCUUUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 64227 | 0.78 | 0.391003 |
Target: 5'- gAGGACCUCGG-CCUGCGGGAAgGCc- -3' miRNA: 3'- -UCCUGGGGCCaGGACGCUUUUgUGug -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 55478 | 0.78 | 0.407671 |
Target: 5'- cGGaGGCCCCGGcgCC-GCGGGAACGCGCc -3' miRNA: 3'- -UC-CUGGGGCCa-GGaCGCUUUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 27605 | 0.77 | 0.460233 |
Target: 5'- cGGcGCCCCGGUCCcacagcGCGGAGAgACGCu -3' miRNA: 3'- uCC-UGGGGCCAGGa-----CGCUUUUgUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 152209 | 0.76 | 0.535436 |
Target: 5'- uGGACCCCGGUCCUGgcCGGuucuAGACAUu- -3' miRNA: 3'- uCCUGGGGCCAGGAC--GCU----UUUGUGug -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 191020 | 0.75 | 0.545162 |
Target: 5'- cGGACCgaGGUgCCUGCGAGgcggggcgcGGCGCACg -3' miRNA: 3'- uCCUGGggCCA-GGACGCUU---------UUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 137225 | 0.74 | 0.644532 |
Target: 5'- cGGAucucuCCCCGGUCCcGaCGAGGACACcgGCg -3' miRNA: 3'- uCCU-----GGGGCCAGGaC-GCUUUUGUG--UG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 224369 | 0.73 | 0.694297 |
Target: 5'- gGGaGACCUCGGUCCgggaccucGCGAccccggcgcGGACGCGCg -3' miRNA: 3'- -UC-CUGGGGCCAGGa-------CGCU---------UUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 119193 | 0.73 | 0.694297 |
Target: 5'- -uGGCCCUGGcCCUGCGGcgGCuGCGCg -3' miRNA: 3'- ucCUGGGGCCaGGACGCUuuUG-UGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 128865 | 0.73 | 0.68342 |
Target: 5'- cGGGCCCUGGUgCUGCGccugcugagggacGAGACGgGCc -3' miRNA: 3'- uCCUGGGGCCAgGACGC-------------UUUUGUgUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 152574 | 0.72 | 0.723625 |
Target: 5'- cGaGACCCCGucgCCUcGCGAAacGACACGCg -3' miRNA: 3'- uC-CUGGGGCca-GGA-CGCUU--UUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 183924 | 0.72 | 0.730379 |
Target: 5'- cGGGACCCUucagcggcucggcuGGUUCUGCucccGGGACGCGCg -3' miRNA: 3'- -UCCUGGGG--------------CCAGGACGc---UUUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 11429 | 0.72 | 0.713913 |
Target: 5'- -uGACCgCGGUCC-GCGggGACGcCGCg -3' miRNA: 3'- ucCUGGgGCCAGGaCGCuuUUGU-GUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 208244 | 0.72 | 0.704134 |
Target: 5'- gAGGAgaaggCCCGGUCCUGgGAAcGCuACACc -3' miRNA: 3'- -UCCUg----GGGCCAGGACgCUUuUG-UGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 162139 | 0.71 | 0.797884 |
Target: 5'- -cGACCCCGG-CUcGCGAGgccGGCACGCc -3' miRNA: 3'- ucCUGGGGCCaGGaCGCUU---UUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 90124 | 0.71 | 0.770882 |
Target: 5'- cGGGCgCCCGGUgC-GCGAGGGC-CGCg -3' miRNA: 3'- uCCUG-GGGCCAgGaCGCUUUUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 121772 | 0.71 | 0.770882 |
Target: 5'- cGGGACCgCGGaccgCCgagGCGggGACGC-Cg -3' miRNA: 3'- -UCCUGGgGCCa---GGa--CGCuuUUGUGuG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 102254 | 0.71 | 0.786329 |
Target: 5'- cGGGCCCgGGUCCggGCGucGuccaucucggcucgGCGCGCg -3' miRNA: 3'- uCCUGGGgCCAGGa-CGCuuU--------------UGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 44426 | 0.71 | 0.797884 |
Target: 5'- cGGAUCCCGGUCuCUGC----GCACGu -3' miRNA: 3'- uCCUGGGGCCAG-GACGcuuuUGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 142639 | 0.7 | 0.84781 |
Target: 5'- cGGaGACCCCucgcaGGUCagguugaUGUGGAAAUACACg -3' miRNA: 3'- -UC-CUGGGG-----CCAGg------ACGCUUUUGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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