Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9286 | 5' | -55.5 | NC_002512.2 | + | 15106 | 0.69 | 0.875337 |
Target: 5'- gGGGACCCggaGGgcgaccggcgccggaCUGCGAcgGCACGCu -3' miRNA: 3'- -UCCUGGGg--CCag-------------GACGCUuuUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 82117 | 0.69 | 0.863027 |
Target: 5'- gAGGcACUCCaGGUCCUcGCGGcuGAGCGCGu -3' miRNA: 3'- -UCC-UGGGG-CCAGGA-CGCU--UUUGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 155302 | 0.7 | 0.839917 |
Target: 5'- gAGGGCCCCGG-CCU-CGA--GCAC-Ca -3' miRNA: 3'- -UCCUGGGGCCaGGAcGCUuuUGUGuG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 27605 | 0.77 | 0.460233 |
Target: 5'- cGGcGCCCCGGUCCcacagcGCGGAGAgACGCu -3' miRNA: 3'- uCC-UGGGGCCAGGa-----CGCUUUUgUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 108592 | 0.68 | 0.915558 |
Target: 5'- gGGGGCCCCGGgga-GCGGcgGC-CGCg -3' miRNA: 3'- -UCCUGGGGCCaggaCGCUuuUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 103500 | 0.68 | 0.903741 |
Target: 5'- cGGGGCCCCGGgcgcucUCCcggGCGGccagaggaccguGAACGCGu -3' miRNA: 3'- -UCCUGGGGCC------AGGa--CGCU------------UUUGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 84168 | 0.69 | 0.863027 |
Target: 5'- cGGGAggUCCCGGUCCagguucgGCGGGAcCAgGCg -3' miRNA: 3'- -UCCU--GGGGCCAGGa------CGCUUUuGUgUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 55478 | 0.78 | 0.407671 |
Target: 5'- cGGaGGCCCCGGcgCC-GCGGGAACGCGCc -3' miRNA: 3'- -UC-CUGGGGCCa-GGaCGCUUUUGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 34983 | 0.68 | 0.897496 |
Target: 5'- uGGGCCUCGcGUCCcGCGGAGGagaaggGCACc -3' miRNA: 3'- uCCUGGGGC-CAGGaCGCUUUUg-----UGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 64227 | 0.78 | 0.391003 |
Target: 5'- gAGGACCUCGG-CCUGCGGGAAgGCc- -3' miRNA: 3'- -UCCUGGGGCCaGGACGCUUUUgUGug -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 48209 | 0.69 | 0.863027 |
Target: 5'- cGGGAUCCCGG-CC-GCGggG-CGCGa -3' miRNA: 3'- -UCCUGGGGCCaGGaCGCuuUuGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 125154 | 0.69 | 0.877447 |
Target: 5'- gGGGGCCCCGGgggCggGCGGAcgGugACAa -3' miRNA: 3'- -UCCUGGGGCCa--GgaCGCUU--UugUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 52784 | 0.7 | 0.84781 |
Target: 5'- cGGACCuCCuGGUC--GCGGAGACGCAg -3' miRNA: 3'- uCCUGG-GG-CCAGgaCGCUUUUGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 14767 | 0.7 | 0.839917 |
Target: 5'- cGGACCCCGG-CCguucugGCGGucGGC-CGCg -3' miRNA: 3'- uCCUGGGGCCaGGa-----CGCUu-UUGuGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 121772 | 0.71 | 0.770882 |
Target: 5'- cGGGACCgCGGaccgCCgagGCGggGACGC-Cg -3' miRNA: 3'- -UCCUGGgGCCa---GGa--CGCuuUUGUGuG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 119193 | 0.73 | 0.694297 |
Target: 5'- -uGGCCCUGGcCCUGCGGcgGCuGCGCg -3' miRNA: 3'- ucCUGGGGCCaGGACGCUuuUG-UGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 60077 | 0.68 | 0.921127 |
Target: 5'- cGGugCCCGuGUUccgaCUGCGGAAcgGCACg -3' miRNA: 3'- uCCugGGGC-CAG----GACGCUUUugUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 112775 | 0.68 | 0.91948 |
Target: 5'- cGGGGCCCCgugccgcugugccgGGUCCaggGCGGcc-CGCACc -3' miRNA: 3'- -UCCUGGGG--------------CCAGGa--CGCUuuuGUGUG- -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 11336 | 0.68 | 0.909763 |
Target: 5'- cGGACgCCGGcgggagGCGAGAGCGCAa -3' miRNA: 3'- uCCUGgGGCCagga--CGCUUUUGUGUg -5' |
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9286 | 5' | -55.5 | NC_002512.2 | + | 107930 | 0.68 | 0.903741 |
Target: 5'- gGGGACCCgGGUCagCUGCaGGGGCAUc- -3' miRNA: 3'- -UCCUGGGgCCAG--GACGcUUUUGUGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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