miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 60077 0.68 0.921127
Target:  5'- cGGugCCCGuGUUccgaCUGCGGAAcgGCACg -3'
miRNA:   3'- uCCugGGGC-CAG----GACGCUUUugUGUG- -5'
9286 5' -55.5 NC_002512.2 + 15106 0.69 0.875337
Target:  5'- gGGGACCCggaGGgcgaccggcgccggaCUGCGAcgGCACGCu -3'
miRNA:   3'- -UCCUGGGg--CCag-------------GACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 121772 0.71 0.770882
Target:  5'- cGGGACCgCGGaccgCCgagGCGggGACGC-Cg -3'
miRNA:   3'- -UCCUGGgGCCa---GGa--CGCuuUUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 9305 0.68 0.921127
Target:  5'- cGGAUCCCGGcacUCCaucggGCG---GCGCACg -3'
miRNA:   3'- uCCUGGGGCC---AGGa----CGCuuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 90124 0.71 0.770882
Target:  5'- cGGGCgCCCGGUgC-GCGAGGGC-CGCg -3'
miRNA:   3'- uCCUG-GGGCCAgGaCGCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 116943 0.66 0.953724
Target:  5'- -cGA-CCCGGUCC-GCGGGcuCGCGCg -3'
miRNA:   3'- ucCUgGGGCCAGGaCGCUUuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 56255 0.7 0.823596
Target:  5'- cGGACCCgGGguucgccgCCgcgGCGGAGGCGCu- -3'
miRNA:   3'- uCCUGGGgCCa-------GGa--CGCUUUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 11940 0.66 0.953724
Target:  5'- uAGGcagucguuccccGCCCCGGUCCccaCGAAGACGgggcCACc -3'
miRNA:   3'- -UCC------------UGGGGCCAGGac-GCUUUUGU----GUG- -5'
9286 5' -55.5 NC_002512.2 + 105528 0.66 0.952552
Target:  5'- uGGACCCCGGcgCCcggggGuCGAAGAUcagguacagccgcaGCACg -3'
miRNA:   3'- uCCUGGGGCCa-GGa----C-GCUUUUG--------------UGUG- -5'
9286 5' -55.5 NC_002512.2 + 35540 0.67 0.945539
Target:  5'- gAGGACCCCucccUCgUGCGcGAcCACGCa -3'
miRNA:   3'- -UCCUGGGGcc--AGgACGCuUUuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 130321 0.67 0.941112
Target:  5'- -cGGCUUCGGUCCgaaGCGGuu-CACGCg -3'
miRNA:   3'- ucCUGGGGCCAGGa--CGCUuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 69941 0.67 0.936458
Target:  5'- uAGGuCUCCGGUCCggccacCGggGACguaucGCACa -3'
miRNA:   3'- -UCCuGGGGCCAGGac----GCuuUUG-----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 152789 0.67 0.926466
Target:  5'- cGGGCCUCcgucucggaGGUCCgcgGCGAcgGCGgGCg -3'
miRNA:   3'- uCCUGGGG---------CCAGGa--CGCUuuUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 108592 0.68 0.915558
Target:  5'- gGGGGCCCCGGgga-GCGGcgGC-CGCg -3'
miRNA:   3'- -UCCUGGGGCCaggaCGCUuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 11336 0.68 0.909763
Target:  5'- cGGACgCCGGcgggagGCGAGAGCGCAa -3'
miRNA:   3'- uCCUGgGGCCagga--CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 103500 0.68 0.903741
Target:  5'- cGGGGCCCCGGgcgcucUCCcggGCGGccagaggaccguGAACGCGu -3'
miRNA:   3'- -UCCUGGGGCC------AGGa--CGCU------------UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 5362 0.69 0.877447
Target:  5'- cGGGACCUgUGGUCCUcCGGcucuGGCGCACc -3'
miRNA:   3'- -UCCUGGG-GCCAGGAcGCUu---UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 82117 0.69 0.863027
Target:  5'- gAGGcACUCCaGGUCCUcGCGGcuGAGCGCGu -3'
miRNA:   3'- -UCC-UGGGG-CCAGGA-CGCU--UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 152472 0.69 0.855515
Target:  5'- gAGGcguCCCgGGUCCUGUGAcgcGACgGCGCc -3'
miRNA:   3'- -UCCu--GGGgCCAGGACGCUu--UUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 64936 0.7 0.843096
Target:  5'- cGGGGuccagcacguacUCCCGGUCCUcgaagaacauacgcgGCGAGAGCucGCACu -3'
miRNA:   3'- -UCCU------------GGGGCCAGGA---------------CGCUUUUG--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.