miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 80500 0.69 0.870339
Target:  5'- gAGGAgCCgGaGUCCUGCGucccCGCGCc -3'
miRNA:   3'- -UCCUgGGgC-CAGGACGCuuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 141352 0.69 0.870339
Target:  5'- -cGACCCUccacccGUCCUGCGAAuccacGAUACACu -3'
miRNA:   3'- ucCUGGGGc-----CAGGACGCUU-----UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 196390 0.69 0.870339
Target:  5'- cGGGACgCCgcgGGUCUggcGCGggGACGCGg -3'
miRNA:   3'- -UCCUGgGG---CCAGGa--CGCuuUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 15106 0.69 0.875337
Target:  5'- gGGGACCCggaGGgcgaccggcgccggaCUGCGAcgGCACGCu -3'
miRNA:   3'- -UCCUGGGg--CCag-------------GACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 125154 0.69 0.877447
Target:  5'- gGGGGCCCCGGgggCggGCGGAcgGugACAa -3'
miRNA:   3'- -UCCUGGGGCCa--GgaCGCUU--UugUGUg -5'
9286 5' -55.5 NC_002512.2 + 5362 0.69 0.877447
Target:  5'- cGGGACCUgUGGUCCUcCGGcucuGGCGCACc -3'
miRNA:   3'- -UCCUGGG-GCCAGGAcGCUu---UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 113211 0.69 0.884345
Target:  5'- cGGGAgCCgGGUCCUcGCccggGGAGACGgGCa -3'
miRNA:   3'- -UCCUgGGgCCAGGA-CG----CUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 212018 0.69 0.891029
Target:  5'- cGucCCCCGGgcCCUGCGcGAGCAcCGCg -3'
miRNA:   3'- uCcuGGGGCCa-GGACGCuUUUGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 34983 0.68 0.897496
Target:  5'- uGGGCCUCGcGUCCcGCGGAGGagaaggGCACc -3'
miRNA:   3'- uCCUGGGGC-CAGGaCGCUUUUg-----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 23091 0.68 0.897496
Target:  5'- cGGAUCCCGGaguucggCgUGCGGAugauCGCGCu -3'
miRNA:   3'- uCCUGGGGCCa------GgACGCUUuu--GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 8555 0.68 0.897496
Target:  5'- ---uCCCgCGGUCgaGCGAAGGCACGa -3'
miRNA:   3'- uccuGGG-GCCAGgaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 210973 0.68 0.897496
Target:  5'- cGGGCCCUGuGUcgcgCCUGCGuggcCGCGCa -3'
miRNA:   3'- uCCUGGGGC-CA----GGACGCuuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 96575 0.68 0.90127
Target:  5'- uAGGAUCCUccucccgccucggGGUCCUcuggggaccggagcGCGGAGACGCGg -3'
miRNA:   3'- -UCCUGGGG-------------CCAGGA--------------CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 162734 0.68 0.903741
Target:  5'- cGGuCCuauCCGGUCUUGUGAGAGcCugACg -3'
miRNA:   3'- uCCuGG---GGCCAGGACGCUUUU-GugUG- -5'
9286 5' -55.5 NC_002512.2 + 107930 0.68 0.903741
Target:  5'- gGGGACCCgGGUCagCUGCaGGGGCAUc- -3'
miRNA:   3'- -UCCUGGGgCCAG--GACGcUUUUGUGug -5'
9286 5' -55.5 NC_002512.2 + 103500 0.68 0.903741
Target:  5'- cGGGGCCCCGGgcgcucUCCcggGCGGccagaggaccguGAACGCGu -3'
miRNA:   3'- -UCCUGGGGCC------AGGa--CGCU------------UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 173395 0.68 0.90798
Target:  5'- cGGGACCgUcGUCCUGCGGGAccucuccgucgaucGCAuCGCg -3'
miRNA:   3'- -UCCUGGgGcCAGGACGCUUU--------------UGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 108971 0.68 0.909171
Target:  5'- uGGGCCCUGG-CCaGCGAacugaagAAGCGgGCg -3'
miRNA:   3'- uCCUGGGGCCaGGaCGCU-------UUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 11336 0.68 0.909763
Target:  5'- cGGACgCCGGcgggagGCGAGAGCGCAa -3'
miRNA:   3'- uCCUGgGGCCagga--CGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 3588 0.68 0.909763
Target:  5'- cAGG-CCCCGGgggUCU-CGggGACAgGCg -3'
miRNA:   3'- -UCCuGGGGCCa--GGAcGCuuUUGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.