miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 227978 0.69 0.868167
Target:  5'- gAGGGCCCCGGcgCCgaggGcCGAGGGCcggagccggacgggACGCg -3'
miRNA:   3'- -UCCUGGGGCCa-GGa---C-GCUUUUG--------------UGUG- -5'
9286 5' -55.5 NC_002512.2 + 226514 0.67 0.951361
Target:  5'- uGGGCCCCgcggagcgggcggacGGUCUgaGCGggGGuCAUACg -3'
miRNA:   3'- uCCUGGGG---------------CCAGGa-CGCuuUU-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 226005 0.66 0.967505
Target:  5'- cGGGACgCCGGUgCUGacucCGAGGACG-ACg -3'
miRNA:   3'- -UCCUGgGGCCAgGAC----GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 224369 0.73 0.694297
Target:  5'- gGGaGACCUCGGUCCgggaccucGCGAccccggcgcGGACGCGCg -3'
miRNA:   3'- -UC-CUGGGGCCAGGa-------CGCU---------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 222798 0.66 0.953724
Target:  5'- cAGGACCgCUGGaggaaCUGgGAGAGC-CACg -3'
miRNA:   3'- -UCCUGG-GGCCag---GACgCUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 220596 0.66 0.961035
Target:  5'- cGGGA-UCCGGUCgUGCGcGAGCugGu -3'
miRNA:   3'- -UCCUgGGGCCAGgACGCuUUUGugUg -5'
9286 5' -55.5 NC_002512.2 + 218593 0.69 0.869617
Target:  5'- gAGGucuCCCCGGggucucgCCcGCGGAcucgaagGACGCGCg -3'
miRNA:   3'- -UCCu--GGGGCCa------GGaCGCUU-------UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 218297 0.66 0.967505
Target:  5'- gGGGuCCCCGGcCCUG-GGcgGC-CGCu -3'
miRNA:   3'- -UCCuGGGGCCaGGACgCUuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 217112 0.69 0.870339
Target:  5'- gGGGcGCCgCCGaGUCCUGCGGcgGCAgcaGCg -3'
miRNA:   3'- -UCC-UGG-GGC-CAGGACGCUuuUGUg--UG- -5'
9286 5' -55.5 NC_002512.2 + 215639 0.67 0.936458
Target:  5'- gAGGAgaUCGGUCCUGCguucccGAAAGCuCACc -3'
miRNA:   3'- -UCCUggGGCCAGGACG------CUUUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 214338 0.67 0.945539
Target:  5'- -cGACUCCGGccUCCUcaGCGAGAGCcagaGCGCc -3'
miRNA:   3'- ucCUGGGGCC--AGGA--CGCUUUUG----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 213680 0.66 0.961035
Target:  5'- gGGGAgCCCGGcgucgCCcGCGGuccucGAACugGCu -3'
miRNA:   3'- -UCCUgGGGCCa----GGaCGCU-----UUUGugUG- -5'
9286 5' -55.5 NC_002512.2 + 212018 0.69 0.891029
Target:  5'- cGucCCCCGGgcCCUGCGcGAGCAcCGCg -3'
miRNA:   3'- uCcuGGGGCCa-GGACGCuUUUGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 211336 0.7 0.815182
Target:  5'- cGGGCCCgGG-CgCUG-GggGACGCGCg -3'
miRNA:   3'- uCCUGGGgCCaG-GACgCuuUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 210973 0.68 0.897496
Target:  5'- cGGGCCCUGuGUcgcgCCUGCGuggcCGCGCa -3'
miRNA:   3'- uCCUGGGGC-CA----GGACGCuuuuGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 208244 0.72 0.704134
Target:  5'- gAGGAgaaggCCCGGUCCUGgGAAcGCuACACc -3'
miRNA:   3'- -UCCUg----GGGCCAGGACgCUUuUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 207087 0.66 0.953724
Target:  5'- uGGAUCCCGccCUUGUGGuagcGGGCGCGCa -3'
miRNA:   3'- uCCUGGGGCcaGGACGCU----UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 203712 0.66 0.953724
Target:  5'- cGGucgcCCgCCGG-CCUGCGAcacGGAgACACg -3'
miRNA:   3'- uCCu---GG-GGCCaGGACGCU---UUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 198741 0.66 0.953724
Target:  5'- cGGGCCa-GGUCC-GCGAAGACGg-- -3'
miRNA:   3'- uCCUGGggCCAGGaCGCUUUUGUgug -5'
9286 5' -55.5 NC_002512.2 + 196390 0.69 0.870339
Target:  5'- cGGGACgCCgcgGGUCUggcGCGggGACGCGg -3'
miRNA:   3'- -UCCUGgGG---CCAGGa--CGCuuUUGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.