miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 196262 0.66 0.964373
Target:  5'- cGGuCaCCGGUCgCgGCGGAAGCGCGg -3'
miRNA:   3'- uCCuGgGGCCAG-GaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 192576 0.68 0.92329
Target:  5'- cGGGGCCUCGGagcggaccgucccgcUgCUGCGGc-GCGCGCg -3'
miRNA:   3'- -UCCUGGGGCC---------------AgGACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 191020 0.75 0.545162
Target:  5'- cGGACCgaGGUgCCUGCGAGgcggggcgcGGCGCACg -3'
miRNA:   3'- uCCUGGggCCA-GGACGCUU---------UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 190362 0.66 0.961035
Target:  5'- gGGGGCgucggCCCGGUCCUGUaccuGCuCACc -3'
miRNA:   3'- -UCCUG-----GGGCCAGGACGcuuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 188600 0.67 0.945539
Target:  5'- cAGGuCgUCGaGUCCUGCGGcaaAAGCACGa -3'
miRNA:   3'- -UCCuGgGGC-CAGGACGCU---UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 183924 0.72 0.730379
Target:  5'- cGGGACCCUucagcggcucggcuGGUUCUGCucccGGGACGCGCg -3'
miRNA:   3'- -UCCUGGGG--------------CCAGGACGc---UUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 181023 0.66 0.961035
Target:  5'- gAGGGaggCCCGcGUCCUGggcaGGAGGcCGCACa -3'
miRNA:   3'- -UCCUg--GGGC-CAGGACg---CUUUU-GUGUG- -5'
9286 5' -55.5 NC_002512.2 + 173395 0.68 0.90798
Target:  5'- cGGGACCgUcGUCCUGCGGGAccucuccgucgaucGCAuCGCg -3'
miRNA:   3'- -UCCUGGgGcCAGGACGCUUU--------------UGU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 162734 0.68 0.903741
Target:  5'- cGGuCCuauCCGGUCUUGUGAGAGcCugACg -3'
miRNA:   3'- uCCuGG---GGCCAGGACGCUUUU-GugUG- -5'
9286 5' -55.5 NC_002512.2 + 162139 0.71 0.797884
Target:  5'- -cGACCCCGG-CUcGCGAGgccGGCACGCc -3'
miRNA:   3'- ucCUGGGGCCaGGaCGCUU---UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 161036 0.68 0.915558
Target:  5'- uGGcgaCCCGcUCCUGCGG--ACGCACg -3'
miRNA:   3'- uCCug-GGGCcAGGACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 155302 0.7 0.839917
Target:  5'- gAGGGCCCCGG-CCU-CGA--GCAC-Ca -3'
miRNA:   3'- -UCCUGGGGCCaGGAcGCUuuUGUGuG- -5'
9286 5' -55.5 NC_002512.2 + 153009 0.68 0.915558
Target:  5'- cGGuCCCCGGUCgggucgGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga----CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 152959 0.68 0.915558
Target:  5'- cGGuCCCCGGUCgggucgGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga----CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 152911 0.67 0.949742
Target:  5'- cGGuCCCCGGUCggucaGCGGGAGCGguCc -3'
miRNA:   3'- uCCuGGGGCCAGga---CGCUUUUGUguG- -5'
9286 5' -55.5 NC_002512.2 + 152789 0.67 0.926466
Target:  5'- cGGGCCUCcgucucggaGGUCCgcgGCGAcgGCGgGCg -3'
miRNA:   3'- uCCUGGGG---------CCAGGa--CGCUuuUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 152705 0.66 0.964373
Target:  5'- -cGuCCCCGGUCggggUGCGGcgggcaggGGACACGCa -3'
miRNA:   3'- ucCuGGGGCCAGg---ACGCU--------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152574 0.72 0.723625
Target:  5'- cGaGACCCCGucgCCUcGCGAAacGACACGCg -3'
miRNA:   3'- uC-CUGGGGCca-GGA-CGCUU--UUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152472 0.69 0.855515
Target:  5'- gAGGcguCCCgGGUCCUGUGAcgcGACgGCGCc -3'
miRNA:   3'- -UCCu--GGGgCCAGGACGCUu--UUG-UGUG- -5'
9286 5' -55.5 NC_002512.2 + 152209 0.76 0.535436
Target:  5'- uGGACCCCGGUCCUGgcCGGuucuAGACAUu- -3'
miRNA:   3'- uCCUGGGGCCAGGAC--GCU----UUUGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.