Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9287 | 5' | -58.3 | NC_002512.2 | + | 10045 | 0.67 | 0.854923 |
Target: 5'- uCCGCCCcc-GGGCcggaCCCCCCGAccGa -3' miRNA: 3'- -GGUGGGacaCCCGa---GGGGGGUUuaCa -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 16530 | 0.66 | 0.889871 |
Target: 5'- gCCGCCagcGcGGGCgUCCCCCUggcuccGGAUGUa -3' miRNA: 3'- -GGUGGga-CaCCCG-AGGGGGG------UUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 21855 | 0.68 | 0.798405 |
Target: 5'- aCCACCCgGgccaGGGuCUCCgCCCCGAc--- -3' miRNA: 3'- -GGUGGGaCa---CCC-GAGG-GGGGUUuaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 22127 | 0.66 | 0.902419 |
Target: 5'- aCCACCacgGcgGcGGCUCCaCCCCGGAg-- -3' miRNA: 3'- -GGUGGga-Ca-C-CCGAGG-GGGGUUUaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 24781 | 0.7 | 0.716205 |
Target: 5'- cCCGCUCggGUccGGGCgcgCCCCCCGAGg-- -3' miRNA: 3'- -GGUGGGa-CA--CCCGa--GGGGGGUUUaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 44352 | 0.67 | 0.862304 |
Target: 5'- uUCGCCCUGUGGuGCgCCCUgU--GUGUg -3' miRNA: 3'- -GGUGGGACACC-CGaGGGGgGuuUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 45729 | 0.68 | 0.8236 |
Target: 5'- aCCGCCCUacgccaUGGcGCUaCCCCCCAu---- -3' miRNA: 3'- -GGUGGGAc-----ACC-CGA-GGGGGGUuuaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 69142 | 0.66 | 0.896251 |
Target: 5'- -uGCCCg--GGGCcggcgccguUCCCCCCGAAa-- -3' miRNA: 3'- ggUGGGacaCCCG---------AGGGGGGUUUaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 77490 | 0.92 | 0.035535 |
Target: 5'- aUCGCCCUGUGGGCU-CCCCCAGAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAgGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 77569 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 77649 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 77879 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 77957 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 78035 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 78113 | 1.09 | 0.002939 |
Target: 5'- aCCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 78193 | 1.05 | 0.005007 |
Target: 5'- aUCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 78273 | 1.05 | 0.005007 |
Target: 5'- aUCACCCUGUGGGCUCCCCCCAAAUGUc -3' miRNA: 3'- -GGUGGGACACCCGAGGGGGGUUUACA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 105894 | 0.7 | 0.716205 |
Target: 5'- cCCACCCgGUGGGCUCgCCgUCGuc-GUa -3' miRNA: 3'- -GGUGGGaCACCCGAG-GGgGGUuuaCA- -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 109395 | 0.72 | 0.589442 |
Target: 5'- aCCAUCCUG-GGGUUCCUggCCCAGAa-- -3' miRNA: 3'- -GGUGGGACaCCCGAGGG--GGGUUUaca -5' |
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9287 | 5' | -58.3 | NC_002512.2 | + | 118699 | 0.69 | 0.762911 |
Target: 5'- gCGCC--GUGGGCUUCCCCCGc---- -3' miRNA: 3'- gGUGGgaCACCCGAGGGGGGUuuaca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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