miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 57221 0.72 0.454785
Target:  5'- cGAGGGCCgagacgCGGGcGUCcCCGCaGGCCGc -3'
miRNA:   3'- -CUCUUGGa-----GCCC-CAGaGGCG-CCGGCu -5'
9291 3' -61.2 NC_002512.2 + 59473 0.71 0.526182
Target:  5'- cGAGGcCCUCGccagcGGGUCUCgaGCGGCCu- -3'
miRNA:   3'- -CUCUuGGAGC-----CCCAGAGg-CGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 72981 0.7 0.582358
Target:  5'- uGAcGGCCUUGGGGa-UCUGCGGCCa- -3'
miRNA:   3'- -CUcUUGGAGCCCCagAGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 77115 0.68 0.687281
Target:  5'- cGGGAACCgCGGGGUCcgauccuuUUCGaccgggcuccCGGCCGGa -3'
miRNA:   3'- -CUCUUGGaGCCCCAG--------AGGC----------GCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 78957 0.69 0.601388
Target:  5'- cGGAGCCuaaguccggcUCGGacuuagcGUCgUCCGCGGCCGAg -3'
miRNA:   3'- cUCUUGG----------AGCCc------CAG-AGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 80760 0.66 0.778624
Target:  5'- cGGGucCCg-GGGGUCcUCGCGGCuCGAg -3'
miRNA:   3'- -CUCuuGGagCCCCAGaGGCGCCG-GCU- -5'
9291 3' -61.2 NC_002512.2 + 80851 0.67 0.721941
Target:  5'- -cGAGCCUCGGGacgcggggcucgguGUCgggcggUCCGCGGCgGc -3'
miRNA:   3'- cuCUUGGAGCCC--------------CAG------AGGCGCCGgCu -5'
9291 3' -61.2 NC_002512.2 + 82018 0.67 0.733918
Target:  5'- -cGAGCCgucgcccgggUCGGGGUCgcgCCGgCGGCgGu -3'
miRNA:   3'- cuCUUGG----------AGCCCCAGa--GGC-GCCGgCu -5'
9291 3' -61.2 NC_002512.2 + 82411 0.7 0.59186
Target:  5'- gGGGAGCC--GGuGGUC-CCGCGGCgGAg -3'
miRNA:   3'- -CUCUUGGagCC-CCAGaGGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 83389 0.68 0.705171
Target:  5'- gGAGAcccgcgcguccccGCCgUgGGGGUUUCCGUGGUgGGu -3'
miRNA:   3'- -CUCU-------------UGG-AgCCCCAGAGGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 85740 1.08 0.002032
Target:  5'- cGAGAACCUCGGGGUCUCCGCGGCCGAc -3'
miRNA:   3'- -CUCUUGGAGCCCCAGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 87252 0.68 0.696718
Target:  5'- --uGACCUgcgaGGGGUCUCCGgGGagCGAa -3'
miRNA:   3'- cucUUGGAg---CCCCAGAGGCgCCg-GCU- -5'
9291 3' -61.2 NC_002512.2 + 89674 0.67 0.752085
Target:  5'- -cGAcguGCCUCGGGGagagCgGCaGGCCGAa -3'
miRNA:   3'- cuCU---UGGAGCCCCaga-GgCG-CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 91622 0.66 0.820465
Target:  5'- cAGGGCCcccgCGGGGaUCUCCaGCGGguUCGGc -3'
miRNA:   3'- cUCUUGGa---GCCCC-AGAGG-CGCC--GGCU- -5'
9291 3' -61.2 NC_002512.2 + 91983 0.69 0.601388
Target:  5'- gGAGGGCCgCGuccGGGUCUcCCGCGucGCCGGc -3'
miRNA:   3'- -CUCUUGGaGC---CCCAGA-GGCGC--CGGCU- -5'
9291 3' -61.2 NC_002512.2 + 92325 0.66 0.778624
Target:  5'- -cGugUCUCGGGGcggUUUCCGCGaCCGAa -3'
miRNA:   3'- cuCuuGGAGCCCC---AGAGGCGCcGGCU- -5'
9291 3' -61.2 NC_002512.2 + 95884 0.72 0.454785
Target:  5'- cGAGGAUCUCGaGGUCgCC-CGGCCGGg -3'
miRNA:   3'- -CUCUUGGAGCcCCAGaGGcGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 96522 0.67 0.724715
Target:  5'- aGGGAGCCgcgcCGGcGGUgugagCCGgGGCCGGg -3'
miRNA:   3'- -CUCUUGGa---GCC-CCAga---GGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 96589 0.73 0.421097
Target:  5'- ---cGCCUCGGGGUcCUCUGgGGaCCGGa -3'
miRNA:   3'- cucuUGGAGCCCCA-GAGGCgCC-GGCU- -5'
9291 3' -61.2 NC_002512.2 + 99267 0.66 0.820465
Target:  5'- cGAGGacGCCggacgCGGGGUCga-GCaggaGGCCGAc -3'
miRNA:   3'- -CUCU--UGGa----GCCCCAGaggCG----CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.