miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 2494 0.66 0.820465
Target:  5'- cGGGcGGCCUUGGGGaacggaUCUCCcccgacgccgGCGGCCc- -3'
miRNA:   3'- -CUC-UUGGAGCCCC------AGAGG----------CGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 3595 0.69 0.630068
Target:  5'- cGGGggUCUCGGGGacaggCgcagagcCCGCGGUCGu -3'
miRNA:   3'- -CUCuuGGAGCCCCa----Ga------GGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 5483 0.66 0.80413
Target:  5'- cGGGGACCUCGuGGcGcgCgUCCGC-GCCGGg -3'
miRNA:   3'- -CUCUUGGAGC-CC-Ca-G-AGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 6337 0.67 0.724715
Target:  5'- gGGGGACCgggcgCGGGGcCggcgggCCGCGGgCGc -3'
miRNA:   3'- -CUCUUGGa----GCCCCaGa-----GGCGCCgGCu -5'
9291 3' -61.2 NC_002512.2 + 7428 0.69 0.649205
Target:  5'- cGAGGGCCggcgCGaGGUUggCCGCGGCCc- -3'
miRNA:   3'- -CUCUUGGa---GCcCCAGa-GGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 8164 0.66 0.795755
Target:  5'- --aGGCgCUCGGGGaUCUCgGCguagcacccgaGGCCGAg -3'
miRNA:   3'- cucUUG-GAGCCCC-AGAGgCG-----------CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 10823 0.69 0.639639
Target:  5'- cGAGcucgaAGCCcgCGGGGagcccCgcgCCGCGGCCGAc -3'
miRNA:   3'- -CUC-----UUGGa-GCCCCa----Ga--GGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 11297 0.67 0.733918
Target:  5'- cGAGAcCC-CGGGGagacCUCCGagagauGGCCGAc -3'
miRNA:   3'- -CUCUuGGaGCCCCa---GAGGCg-----CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 18056 0.69 0.637725
Target:  5'- cGAGAGCC-CGGGGUCcaggaagUcgaaauaggugcgCCGCGGCgGGa -3'
miRNA:   3'- -CUCUUGGaGCCCCAG-------A-------------GGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 19360 0.74 0.33673
Target:  5'- -cGGACCgUCGGGGgCUCgGCGGCCu- -3'
miRNA:   3'- cuCUUGG-AGCCCCaGAGgCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 30417 0.66 0.778624
Target:  5'- cGGGGACg-CGGGcGUCgUCGCGGCCc- -3'
miRNA:   3'- -CUCUUGgaGCCC-CAGaGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 32097 0.66 0.78725
Target:  5'- --cGGCC-CGGGuGUCcUCGCGGUCGAg -3'
miRNA:   3'- cucUUGGaGCCC-CAGaGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 43295 0.66 0.820465
Target:  5'- -cGAACaggUCGGGGUagagGCGGCCGGu -3'
miRNA:   3'- cuCUUGg--AGCCCCAgaggCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 44083 0.67 0.761034
Target:  5'- aGAGGAgCUCGGGGUaggccCUCCccucGCCGAg -3'
miRNA:   3'- -CUCUUgGAGCCCCA-----GAGGcgc-CGGCU- -5'
9291 3' -61.2 NC_002512.2 + 45110 0.66 0.776885
Target:  5'- cGGGccacguCCUCGGGGUCgacgaccacgggCCGCccGCCGAu -3'
miRNA:   3'- -CUCuu----GGAGCCCCAGa-----------GGCGc-CGGCU- -5'
9291 3' -61.2 NC_002512.2 + 46175 0.66 0.80413
Target:  5'- cGGAucuCCUCGGaGGUCUCC-CcGUCGAg -3'
miRNA:   3'- cUCUu--GGAGCC-CCAGAGGcGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 46548 0.68 0.677804
Target:  5'- --cGACCUCcaugaGGGUCU-CGCGGCUGAa -3'
miRNA:   3'- cucUUGGAGc----CCCAGAgGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 47819 0.67 0.743044
Target:  5'- cGGAGCCgCGGcugaGGUCggCGCGGCUGGc -3'
miRNA:   3'- cUCUUGGaGCC----CCAGagGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 49222 0.7 0.59186
Target:  5'- uGAGAuCUUCGGGGcCaCCGCGGCgGc -3'
miRNA:   3'- -CUCUuGGAGCCCCaGaGGCGCCGgCu -5'
9291 3' -61.2 NC_002512.2 + 56255 0.74 0.373505
Target:  5'- -cGGACC-CGGGGUUcgccgCCGCGGCgGAg -3'
miRNA:   3'- cuCUUGGaGCCCCAGa----GGCGCCGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.