miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 123133 0.66 0.795755
Target:  5'- cGAGAGCCggacgCGGaGcGcCgCCGgGGCCGAg -3'
miRNA:   3'- -CUCUUGGa----GCC-C-CaGaGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 118766 0.66 0.769882
Target:  5'- aAGGACCccgCGGGcGgcgcCUCCGCcGCCGGg -3'
miRNA:   3'- cUCUUGGa--GCCC-Ca---GAGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 123959 0.66 0.769882
Target:  5'- cGGGAcCCUCGGGGcucuggcgUUCCGUGuaCGAc -3'
miRNA:   3'- -CUCUuGGAGCCCCa-------GAGGCGCcgGCU- -5'
9291 3' -61.2 NC_002512.2 + 141906 0.66 0.820465
Target:  5'- ---cGCgUCGGGG-CgCCGCGGCCc- -3'
miRNA:   3'- cucuUGgAGCCCCaGaGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 113269 0.66 0.769882
Target:  5'- gGGGGcgGCCggCGGGGcagCCGCGGCgGGc -3'
miRNA:   3'- -CUCU--UGGa-GCCCCagaGGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 220314 0.66 0.769882
Target:  5'- gGGGGGCCg-GGGGccgggCUCCGgggGGCCGGa -3'
miRNA:   3'- -CUCUUGGagCCCCa----GAGGCg--CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 225502 0.66 0.769882
Target:  5'- cGGGGCCgccgCGGGGgucccgggCUUCGCGGaCGGg -3'
miRNA:   3'- cUCUUGGa---GCCCCa-------GAGGCGCCgGCU- -5'
9291 3' -61.2 NC_002512.2 + 149490 0.66 0.773393
Target:  5'- ---cACCaUCGGGGgCggguggucaaaaggCCGCGGCCGGa -3'
miRNA:   3'- cucuUGG-AGCCCCaGa-------------GGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 226217 0.66 0.778624
Target:  5'- gGAGGACCUCcGGaccGUCggCCGCgagggGGCCGGa -3'
miRNA:   3'- -CUCUUGGAGcCC---CAGa-GGCG-----CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 150703 0.66 0.78725
Target:  5'- -cGGACCguuGGcUCUCgGCGGCCGAc -3'
miRNA:   3'- cuCUUGGagcCCcAGAGgCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 185193 0.66 0.78725
Target:  5'- cGAGAACgCggCGGcGGUCgacgCCGCGGUgGc -3'
miRNA:   3'- -CUCUUG-Ga-GCC-CCAGa---GGCGCCGgCu -5'
9291 3' -61.2 NC_002512.2 + 203944 0.66 0.820465
Target:  5'- cGAGGcCCUCGuGG-C-CCGcCGGCCGAc -3'
miRNA:   3'- -CUCUuGGAGCcCCaGaGGC-GCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 108441 0.66 0.795755
Target:  5'- cGGGGGCCggGGGGUCccUCCcCGGgCGGc -3'
miRNA:   3'- -CUCUUGGagCCCCAG--AGGcGCCgGCU- -5'
9291 3' -61.2 NC_002512.2 + 191586 0.66 0.795755
Target:  5'- cGAGAGCCUguucGGUCg-CGCGGUCGAg -3'
miRNA:   3'- -CUCUUGGAgcc-CCAGagGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 142192 0.66 0.80413
Target:  5'- aAGGAUC-CGGGGUCgugUCgGCGcGCCGu -3'
miRNA:   3'- cUCUUGGaGCCCCAG---AGgCGC-CGGCu -5'
9291 3' -61.2 NC_002512.2 + 157047 0.66 0.80413
Target:  5'- cGAGGACCccggcaaggCGGGcGUC-CCGgGGuCCGGg -3'
miRNA:   3'- -CUCUUGGa--------GCCC-CAGaGGCgCC-GGCU- -5'
9291 3' -61.2 NC_002512.2 + 202932 0.66 0.80413
Target:  5'- -cGAACgUCaGGGUCuggcUCCGCcGCCGGu -3'
miRNA:   3'- cuCUUGgAGcCCCAG----AGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 184212 0.66 0.81237
Target:  5'- -cGGACCgCGGGuucUCUCUGgGGUCGAc -3'
miRNA:   3'- cuCUUGGaGCCCc--AGAGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 99267 0.66 0.820465
Target:  5'- cGAGGacGCCggacgCGGGGUCga-GCaggaGGCCGAc -3'
miRNA:   3'- -CUCU--UGGa----GCCCCAGaggCG----CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 182002 0.66 0.820465
Target:  5'- cGGAcguCCUCGGGGUCaggCCcagGCGGuaGAa -3'
miRNA:   3'- cUCUu--GGAGCCCCAGa--GG---CGCCggCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.