miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 85740 1.08 0.002032
Target:  5'- cGAGAACCUCGGGGUCUCCGCGGCCGAc -3'
miRNA:   3'- -CUCUUGGAGCCCCAGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 191730 0.76 0.265368
Target:  5'- -uGGACCuccgcgucggUCGGGGUgUCCGUGGCCGu -3'
miRNA:   3'- cuCUUGG----------AGCCCCAgAGGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 224623 0.75 0.322777
Target:  5'- -cGGG-CUCGGGGUCgccgCCGCGGCCu- -3'
miRNA:   3'- cuCUUgGAGCCCCAGa---GGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 19360 0.74 0.33673
Target:  5'- -cGGACCgUCGGGGgCUCgGCGGCCu- -3'
miRNA:   3'- cuCUUGG-AGCCCCaGAGgCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 126510 0.74 0.343869
Target:  5'- cGAGcGCCUCGGcGG-CUCCGgCGGCCu- -3'
miRNA:   3'- -CUCuUGGAGCC-CCaGAGGC-GCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 125163 0.74 0.358473
Target:  5'- gGAGAGCUUCGaGGaCUUCGUGGCCGGc -3'
miRNA:   3'- -CUCUUGGAGCcCCaGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 100490 0.74 0.365936
Target:  5'- -cGGACCUUGGGGaggCCGCGGUCGu -3'
miRNA:   3'- cuCUUGGAGCCCCagaGGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 56255 0.74 0.373505
Target:  5'- -cGGACC-CGGGGUUcgccgCCGCGGCgGAg -3'
miRNA:   3'- cuCUUGGaGCCCCAGa----GGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 220874 0.73 0.396842
Target:  5'- cGGGGCCUCGGcGcUCUCCaucGUGGCCGAc -3'
miRNA:   3'- cUCUUGGAGCC-CcAGAGG---CGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 218290 0.73 0.404827
Target:  5'- --cGGCCUCGGGGUCcCCggcccuggGCGGCCGc -3'
miRNA:   3'- cucUUGGAGCCCCAGaGG--------CGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 96589 0.73 0.421097
Target:  5'- ---cGCCUCGGGGUcCUCUGgGGaCCGGa -3'
miRNA:   3'- cucuUGGAGCCCCA-GAGGCgCC-GGCU- -5'
9291 3' -61.2 NC_002512.2 + 57221 0.72 0.454785
Target:  5'- cGAGGGCCgagacgCGGGcGUCcCCGCaGGCCGc -3'
miRNA:   3'- -CUCUUGGa-----GCCC-CAGaGGCG-CCGGCu -5'
9291 3' -61.2 NC_002512.2 + 95884 0.72 0.454785
Target:  5'- cGAGGAUCUCGaGGUCgCC-CGGCCGGg -3'
miRNA:   3'- -CUCUUGGAGCcCCAGaGGcGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 106541 0.72 0.472166
Target:  5'- -cGGACCUuggaCGGGGgCUCCaGCGGcCCGAa -3'
miRNA:   3'- cuCUUGGA----GCCCCaGAGG-CGCC-GGCU- -5'
9291 3' -61.2 NC_002512.2 + 215095 0.72 0.480982
Target:  5'- cGAGGACUUCGucGcCgCCGCGGCCGAc -3'
miRNA:   3'- -CUCUUGGAGCccCaGaGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 201827 0.72 0.480982
Target:  5'- -cGcGCC-CGGGGgcuccUUCCGCGGCCGGc -3'
miRNA:   3'- cuCuUGGaGCCCCa----GAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 118583 0.71 0.489878
Target:  5'- aGGGAGCCgcgaUCGGcGGcccUCUCCccgcgGCGGCCGAc -3'
miRNA:   3'- -CUCUUGG----AGCC-CC---AGAGG-----CGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 108444 0.71 0.498849
Target:  5'- cGGAccCCUCaGGG-CUCCGgGGCCGAc -3'
miRNA:   3'- cUCUu-GGAGcCCCaGAGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 146503 0.71 0.502458
Target:  5'- cGGGGACg-CGcGGGUCUCCGCGacgaucguccacaucGCCGAc -3'
miRNA:   3'- -CUCUUGgaGC-CCCAGAGGCGC---------------CGGCU- -5'
9291 3' -61.2 NC_002512.2 + 134309 0.71 0.520668
Target:  5'- cGAGGACgUCgccGGGGccggcgccgacggacUCgCCGCGGCCGAg -3'
miRNA:   3'- -CUCUUGgAG---CCCC---------------AGaGGCGCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.