miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 142174 0.69 0.620498
Target:  5'- aGGAGCCgucUCGcGGcGUCUCCGCGucGCCGc -3'
miRNA:   3'- cUCUUGG---AGC-CC-CAGAGGCGC--CGGCu -5'
9291 3' -61.2 NC_002512.2 + 85740 1.08 0.002032
Target:  5'- cGAGAACCUCGGGGUCUCCGCGGCCGAc -3'
miRNA:   3'- -CUCUUGGAGCCCCAGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 19360 0.74 0.33673
Target:  5'- -cGGACCgUCGGGGgCUCgGCGGCCu- -3'
miRNA:   3'- cuCUUGG-AGCCCCaGAGgCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 49222 0.7 0.59186
Target:  5'- uGAGAuCUUCGGGGcCaCCGCGGCgGc -3'
miRNA:   3'- -CUCUuGGAGCCCCaGaGGCGCCGgCu -5'
9291 3' -61.2 NC_002512.2 + 82411 0.7 0.59186
Target:  5'- gGGGAGCC--GGuGGUC-CCGCGGCgGAg -3'
miRNA:   3'- -CUCUUGGagCC-CCAGaGGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 126510 0.74 0.343869
Target:  5'- cGAGcGCCUCGGcGG-CUCCGgCGGCCu- -3'
miRNA:   3'- -CUCuUGGAGCC-CCaGAGGC-GCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 134309 0.71 0.520668
Target:  5'- cGAGGACgUCgccGGGGccggcgccgacggacUCgCCGCGGCCGAg -3'
miRNA:   3'- -CUCUUGgAG---CCCC---------------AGaGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 72981 0.7 0.582358
Target:  5'- uGAcGGCCUUGGGGa-UCUGCGGCCa- -3'
miRNA:   3'- -CUcUUGGAGCCCCagAGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 121526 0.69 0.610936
Target:  5'- ----uCCUCGGGGagCUCCGgCGcGCCGGg -3'
miRNA:   3'- cucuuGGAGCCCCa-GAGGC-GC-CGGCU- -5'
9291 3' -61.2 NC_002512.2 + 18056 0.69 0.637725
Target:  5'- cGAGAGCC-CGGGGUCcaggaagUcgaaauaggugcgCCGCGGCgGGa -3'
miRNA:   3'- -CUCUUGGaGCCCCAG-------A-------------GGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 141906 0.66 0.820465
Target:  5'- ---cGCgUCGGGG-CgCCGCGGCCc- -3'
miRNA:   3'- cucuUGgAGCCCCaGaGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 57221 0.72 0.454785
Target:  5'- cGAGGGCCgagacgCGGGcGUCcCCGCaGGCCGc -3'
miRNA:   3'- -CUCUUGGa-----GCCC-CAGaGGCG-CCGGCu -5'
9291 3' -61.2 NC_002512.2 + 56255 0.74 0.373505
Target:  5'- -cGGACC-CGGGGUUcgccgCCGCGGCgGAg -3'
miRNA:   3'- cuCUUGGaGCCCCAGa----GGCGCCGgCU- -5'
9291 3' -61.2 NC_002512.2 + 78957 0.69 0.601388
Target:  5'- cGGAGCCuaaguccggcUCGGacuuagcGUCgUCCGCGGCCGAg -3'
miRNA:   3'- cUCUUGG----------AGCCc------CAG-AGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 108591 0.69 0.610936
Target:  5'- gGGGGGCCcCGGGGag-CgGCGGCCGc -3'
miRNA:   3'- -CUCUUGGaGCCCCagaGgCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 108444 0.71 0.498849
Target:  5'- cGGAccCCUCaGGG-CUCCGgGGCCGAc -3'
miRNA:   3'- cUCUu-GGAGcCCCaGAGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 3595 0.69 0.630068
Target:  5'- cGGGggUCUCGGGGacaggCgcagagcCCGCGGUCGu -3'
miRNA:   3'- -CUCuuGGAGCCCCa----Ga------GGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 10823 0.69 0.639639
Target:  5'- cGAGcucgaAGCCcgCGGGGagcccCgcgCCGCGGCCGAc -3'
miRNA:   3'- -CUC-----UUGGa-GCCCCa----Ga--GGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 108722 0.71 0.53542
Target:  5'- cGAGAacGCCUCGcccuGGg--CCGCGGCCGGc -3'
miRNA:   3'- -CUCU--UGGAGCc---CCagaGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 91983 0.69 0.601388
Target:  5'- gGAGGGCCgCGuccGGGUCUcCCGCGucGCCGGc -3'
miRNA:   3'- -CUCUUGGaGC---CCCAGA-GGCGC--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.