miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 226217 0.66 0.778624
Target:  5'- gGAGGACCUCcGGaccGUCggCCGCgagggGGCCGGa -3'
miRNA:   3'- -CUCUUGGAGcCC---CAGa-GGCG-----CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 225647 0.68 0.657804
Target:  5'- -cGAACCacccgUCGGGGcucgacgucccgcUCcCCGCGGCCGc -3'
miRNA:   3'- cuCUUGG-----AGCCCC-------------AGaGGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 225502 0.66 0.769882
Target:  5'- cGGGGCCgccgCGGGGgucccgggCUUCGCGGaCGGg -3'
miRNA:   3'- cUCUUGGa---GCCCCa-------GAGGCGCCgGCU- -5'
9291 3' -61.2 NC_002512.2 + 225404 0.69 0.639639
Target:  5'- gGGGAcggcGCCggggUCGGGGUCgggUUGgGGCCGAc -3'
miRNA:   3'- -CUCU----UGG----AGCCCCAGa--GGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 224623 0.75 0.322777
Target:  5'- -cGGG-CUCGGGGUCgccgCCGCGGCCu- -3'
miRNA:   3'- cuCUUgGAGCCCCAGa---GGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 222105 0.67 0.743044
Target:  5'- cGGAcuuCCUCGaucccaccaUCUCCGCGGCCGAc -3'
miRNA:   3'- cUCUu--GGAGCccc------AGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 220874 0.73 0.396842
Target:  5'- cGGGGCCUCGGcGcUCUCCaucGUGGCCGAc -3'
miRNA:   3'- cUCUUGGAGCC-CcAGAGG---CGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 220314 0.66 0.769882
Target:  5'- gGGGGGCCg-GGGGccgggCUCCGgggGGCCGGa -3'
miRNA:   3'- -CUCUUGGagCCCCa----GAGGCg--CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 218592 0.69 0.620498
Target:  5'- gGAGGucuCCcCGGGGUCUcgcCCGCGGaCuCGAa -3'
miRNA:   3'- -CUCUu--GGaGCCCCAGA---GGCGCC-G-GCU- -5'
9291 3' -61.2 NC_002512.2 + 218290 0.73 0.404827
Target:  5'- --cGGCCUCGGGGUCcCCggcccuggGCGGCCGc -3'
miRNA:   3'- cucUUGGAGCCCCAGaGG--------CGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 217758 0.67 0.752085
Target:  5'- aAGAACCcCGGGcccguccccGUCgccggggUCGCGGCCGGc -3'
miRNA:   3'- cUCUUGGaGCCC---------CAGa------GGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 215095 0.72 0.480982
Target:  5'- cGAGGACUUCGucGcCgCCGCGGCCGAc -3'
miRNA:   3'- -CUCUUGGAGCccCaGaGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 203944 0.66 0.820465
Target:  5'- cGAGGcCCUCGuGG-C-CCGcCGGCCGAc -3'
miRNA:   3'- -CUCUuGGAGCcCCaGaGGC-GCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 202932 0.66 0.80413
Target:  5'- -cGAACgUCaGGGUCuggcUCCGCcGCCGGu -3'
miRNA:   3'- cuCUUGgAGcCCCAG----AGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 201827 0.72 0.480982
Target:  5'- -cGcGCC-CGGGGgcuccUUCCGCGGCCGGc -3'
miRNA:   3'- cuCuUGGaGCCCCa----GAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 201455 0.67 0.761034
Target:  5'- --cGGCCUCgaGGuGGUCcCCGuCGGCCGGg -3'
miRNA:   3'- cucUUGGAG--CC-CCAGaGGC-GCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 196927 0.66 0.820465
Target:  5'- cGAGAGCa-CGGcGGUCUucacguccaUCGUGGCCGc -3'
miRNA:   3'- -CUCUUGgaGCC-CCAGA---------GGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 196411 0.69 0.610936
Target:  5'- cGGGGACg-CGGGGgg-CgGCGGCCGGg -3'
miRNA:   3'- -CUCUUGgaGCCCCagaGgCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 191730 0.76 0.265368
Target:  5'- -uGGACCuccgcgucggUCGGGGUgUCCGUGGCCGu -3'
miRNA:   3'- cuCUUGG----------AGCCCCAgAGGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 191586 0.66 0.795755
Target:  5'- cGAGAGCCUguucGGUCg-CGCGGUCGAg -3'
miRNA:   3'- -CUCUUGGAgcc-CCAGagGCGCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.