miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 117067 0.66 0.914204
Target:  5'- uGCCGGAGCACgCgcagGcGCugGAGGUgCGGg -3'
miRNA:   3'- cUGGUCUCGUGgGa---CaCG--CUCCA-GCC- -5'
9292 5' -58.3 NC_002512.2 + 131214 0.66 0.914204
Target:  5'- cGGCCAG-GCGCUCgacGU-CGcGGUCGGa -3'
miRNA:   3'- -CUGGUCuCGUGGGa--CAcGCuCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 139960 0.66 0.913643
Target:  5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3'
miRNA:   3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 118964 0.66 0.908496
Target:  5'- cACCgAGAGCgcgGCCCUG-GUGAcGGUgGGc -3'
miRNA:   3'- cUGG-UCUCG---UGGGACaCGCU-CCAgCC- -5'
9292 5' -58.3 NC_002512.2 + 211903 0.66 0.902572
Target:  5'- -uCCGGGGCugCCgcgucGU-CGAGcGUCGGg -3'
miRNA:   3'- cuGGUCUCGugGGa----CAcGCUC-CAGCC- -5'
9292 5' -58.3 NC_002512.2 + 50706 0.66 0.896436
Target:  5'- cGGCCcGAGgACCCg--GCGAaGGUCGc -3'
miRNA:   3'- -CUGGuCUCgUGGGacaCGCU-CCAGCc -5'
9292 5' -58.3 NC_002512.2 + 123727 0.66 0.896436
Target:  5'- gGACCu--GUGCUCggaccUGCGGGGUCGGa -3'
miRNA:   3'- -CUGGucuCGUGGGac---ACGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 132118 0.66 0.890089
Target:  5'- cGGCCGGcAGCGCCCgGUaGCGccGGUUGcGg -3'
miRNA:   3'- -CUGGUC-UCGUGGGaCA-CGCu-CCAGC-C- -5'
9292 5' -58.3 NC_002512.2 + 124279 0.66 0.889443
Target:  5'- cGGCCGGugccucGGCGCCUgcaUGaUGCuguucaaGAGGUCGGa -3'
miRNA:   3'- -CUGGUC------UCGUGGG---AC-ACG-------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 155606 0.66 0.886182
Target:  5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3'
miRNA:   3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5'
9292 5' -58.3 NC_002512.2 + 94547 0.66 0.883536
Target:  5'- cGGCCAGcAGCACCCcG-GCGcGGcugacgccgaccUCGGg -3'
miRNA:   3'- -CUGGUC-UCGUGGGaCaCGCuCC------------AGCC- -5'
9292 5' -58.3 NC_002512.2 + 131767 0.66 0.883536
Target:  5'- cGACCAGcGC-CCCggcaaGCGGGG-CGGg -3'
miRNA:   3'- -CUGGUCuCGuGGGaca--CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 160763 0.66 0.883536
Target:  5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3'
miRNA:   3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 186069 0.66 0.883536
Target:  5'- aACCucaAGAGCGCCaUGgucgGCGAgaccGGUCGGc -3'
miRNA:   3'- cUGG---UCUCGUGGgACa---CGCU----CCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 178811 0.67 0.876778
Target:  5'- cGGCCAGuugguccgacAGCGCCCggacGUGCucGGGUCGc -3'
miRNA:   3'- -CUGGUC----------UCGUGGGa---CACGc-UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 44475 0.67 0.876778
Target:  5'- -uCCAGGGCGCCCcGggGCcGGG-CGGa -3'
miRNA:   3'- cuGGUCUCGUGGGaCa-CGcUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 201683 0.67 0.862671
Target:  5'- cGGCgAGGGCGgCCgcgucugGUGCGGGaUCGGc -3'
miRNA:   3'- -CUGgUCUCGUgGGa------CACGCUCcAGCC- -5'
9292 5' -58.3 NC_002512.2 + 162130 0.67 0.862671
Target:  5'- cGCCGGAGacgACCCcGgcucGCGAGGcCGGc -3'
miRNA:   3'- cUGGUCUCg--UGGGaCa---CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 176521 0.67 0.862671
Target:  5'- -uCCGGAGCGuCCUcuaUGUGCgGAGGcucgcUCGGg -3'
miRNA:   3'- cuGGUCUCGU-GGG---ACACG-CUCC-----AGCC- -5'
9292 5' -58.3 NC_002512.2 + 38929 0.67 0.854586
Target:  5'- gGGCCGccgcggcGGGCGCCCgcGUGCGcccGGGUCuGGu -3'
miRNA:   3'- -CUGGU-------CUCGUGGGa-CACGC---UCCAG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.