miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 86036 1.09 0.002793
Target:  5'- cGACCAGAGCACCCUGUGCGAGGUCGGc -3'
miRNA:   3'- -CUGGUCUCGUGGGACACGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 44346 0.76 0.376625
Target:  5'- cGACCauucgcccuguGGuGCGCCCUGUGUGuGGGUUGGa -3'
miRNA:   3'- -CUGG-----------UCuCGUGGGACACGC-UCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 194638 0.75 0.45137
Target:  5'- uGACaCGGGGCACCC-GUcCGAGGUCGa -3'
miRNA:   3'- -CUG-GUCUCGUGGGaCAcGCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 201066 0.74 0.478038
Target:  5'- cGACCGG-GC-CCacaUGUGCGGGGUCuGGg -3'
miRNA:   3'- -CUGGUCuCGuGGg--ACACGCUCCAG-CC- -5'
9292 5' -58.3 NC_002512.2 + 74572 0.74 0.478038
Target:  5'- cGACCuGGGCGCUCUgGUGCucGAGGcCGGg -3'
miRNA:   3'- -CUGGuCUCGUGGGA-CACG--CUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 8918 0.73 0.552557
Target:  5'- uGGCCAGGGCGgCCUcgGCcGGGUCGGc -3'
miRNA:   3'- -CUGGUCUCGUgGGAcaCGcUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 125012 0.72 0.600888
Target:  5'- gGGCCAGGGaCGCCCgcgGgGcCGAGGUCGc -3'
miRNA:   3'- -CUGGUCUC-GUGGGa--CaC-GCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 90118 0.71 0.630185
Target:  5'- gGAUCGcGGGCGCCCgGUgcGCGAGGgccgCGGa -3'
miRNA:   3'- -CUGGU-CUCGUGGGaCA--CGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 187123 0.71 0.630185
Target:  5'- gGACCAgGGGCAggggcugcCCCUGUuccUGGGGUCGGg -3'
miRNA:   3'- -CUGGU-CUCGU--------GGGACAc--GCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 106991 0.71 0.659493
Target:  5'- aGGCCGGGaCGCCCgg-GcCGGGGUCGGc -3'
miRNA:   3'- -CUGGUCUcGUGGGacaC-GCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 219216 0.7 0.698254
Target:  5'- uGCCGG-GCcgGCCUcG-GCGAGGUCGGg -3'
miRNA:   3'- cUGGUCuCG--UGGGaCaCGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 95256 0.7 0.72682
Target:  5'- -uCCGGAGgGCcgcgcggcuCCUGaacgGCGGGGUCGGg -3'
miRNA:   3'- cuGGUCUCgUG---------GGACa---CGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 4293 0.69 0.733396
Target:  5'- cGGCCAGcuggucgaagacccGGCGCCCcu--CGAGGUCGGc -3'
miRNA:   3'- -CUGGUC--------------UCGUGGGacacGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 163052 0.69 0.772831
Target:  5'- aACaAGAGCgaaGCCCUGUGCGAGuGgaaaCGGu -3'
miRNA:   3'- cUGgUCUCG---UGGGACACGCUC-Ca---GCC- -5'
9292 5' -58.3 NC_002512.2 + 156819 0.68 0.790488
Target:  5'- -cUCGGucGGCAaCCUGUGCGAGGccugCGGg -3'
miRNA:   3'- cuGGUC--UCGUgGGACACGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 124258 0.68 0.790488
Target:  5'- cGACaCGGuGCACCCgacgGCGGcGUCGGa -3'
miRNA:   3'- -CUG-GUCuCGUGGGaca-CGCUcCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 137754 0.68 0.790488
Target:  5'- cGCCGcAGCGCCCgcagcGUGUccgcggucugGAGGUCGGc -3'
miRNA:   3'- cUGGUcUCGUGGGa----CACG----------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 7422 0.68 0.790488
Target:  5'- cGACCGcGAGgGCCg-GcGCGAGGUUGGc -3'
miRNA:   3'- -CUGGU-CUCgUGGgaCaCGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 155320 0.68 0.790488
Target:  5'- cACCAGAGCGCCCagGU-CGcGG-CGGa -3'
miRNA:   3'- cUGGUCUCGUGGGa-CAcGCuCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 185420 0.68 0.799126
Target:  5'- -cCCGGGGCGCCCUGgaggucuuCGAGGcCGu -3'
miRNA:   3'- cuGGUCUCGUGGGACac------GCUCCaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.