miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 219216 0.7 0.698254
Target:  5'- uGCCGG-GCcgGCCUcG-GCGAGGUCGGg -3'
miRNA:   3'- cUGGUCuCG--UGGGaCaCGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 211903 0.66 0.902572
Target:  5'- -uCCGGGGCugCCgcgucGU-CGAGcGUCGGg -3'
miRNA:   3'- cuGGUCUCGugGGa----CAcGCUC-CAGCC- -5'
9292 5' -58.3 NC_002512.2 + 201683 0.67 0.862671
Target:  5'- cGGCgAGGGCGgCCgcgucugGUGCGGGaUCGGc -3'
miRNA:   3'- -CUGgUCUCGUgGGa------CACGCUCcAGCC- -5'
9292 5' -58.3 NC_002512.2 + 201066 0.74 0.478038
Target:  5'- cGACCGG-GC-CCacaUGUGCGGGGUCuGGg -3'
miRNA:   3'- -CUGGUCuCGuGGg--ACACGCUCCAG-CC- -5'
9292 5' -58.3 NC_002512.2 + 194638 0.75 0.45137
Target:  5'- uGACaCGGGGCACCC-GUcCGAGGUCGa -3'
miRNA:   3'- -CUG-GUCUCGUGGGaCAcGCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 187123 0.71 0.630185
Target:  5'- gGACCAgGGGCAggggcugcCCCUGUuccUGGGGUCGGg -3'
miRNA:   3'- -CUGGU-CUCGU--------GGGACAc--GCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 186069 0.66 0.883536
Target:  5'- aACCucaAGAGCGCCaUGgucgGCGAgaccGGUCGGc -3'
miRNA:   3'- cUGG---UCUCGUGGgACa---CGCU----CCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 185420 0.68 0.799126
Target:  5'- -cCCGGGGCGCCCUGgaggucuuCGAGGcCGu -3'
miRNA:   3'- cuGGUCUCGUGGGACac------GCUCCaGCc -5'
9292 5' -58.3 NC_002512.2 + 178811 0.67 0.876778
Target:  5'- cGGCCAGuugguccgacAGCGCCCggacGUGCucGGGUCGc -3'
miRNA:   3'- -CUGGUC----------UCGUGGGa---CACGc-UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 176521 0.67 0.862671
Target:  5'- -uCCGGAGCGuCCUcuaUGUGCgGAGGcucgcUCGGg -3'
miRNA:   3'- cuGGUCUCGU-GGG---ACACG-CUCC-----AGCC- -5'
9292 5' -58.3 NC_002512.2 + 163407 0.68 0.829829
Target:  5'- uGCCGGGGUugcuguuaACCgguuuauauaucuuCUGUGCGAGG-CGGa -3'
miRNA:   3'- cUGGUCUCG--------UGG--------------GACACGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 163052 0.69 0.772831
Target:  5'- aACaAGAGCgaaGCCCUGUGCGAGuGgaaaCGGu -3'
miRNA:   3'- cUGgUCUCG---UGGGACACGCUC-Ca---GCC- -5'
9292 5' -58.3 NC_002512.2 + 162130 0.67 0.862671
Target:  5'- cGCCGGAGacgACCCcGgcucGCGAGGcCGGc -3'
miRNA:   3'- cUGGUCUCg--UGGGaCa---CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 160763 0.66 0.883536
Target:  5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3'
miRNA:   3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 156819 0.68 0.790488
Target:  5'- -cUCGGucGGCAaCCUGUGCGAGGccugCGGg -3'
miRNA:   3'- cuGGUC--UCGUgGGACACGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 155606 0.66 0.886182
Target:  5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3'
miRNA:   3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5'
9292 5' -58.3 NC_002512.2 + 155320 0.68 0.790488
Target:  5'- cACCAGAGCGCCCagGU-CGcGG-CGGa -3'
miRNA:   3'- cUGGUCUCGUGGGa-CAcGCuCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 145538 0.68 0.824182
Target:  5'- gGGCCGGAGCAUCCcgcuCGAGGacgCGGc -3'
miRNA:   3'- -CUGGUCUCGUGGGacacGCUCCa--GCC- -5'
9292 5' -58.3 NC_002512.2 + 139960 0.66 0.913643
Target:  5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3'
miRNA:   3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 137754 0.68 0.790488
Target:  5'- cGCCGcAGCGCCCgcagcGUGUccgcggucugGAGGUCGGc -3'
miRNA:   3'- cUGGUcUCGUGGGa----CACG----------CUCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.