miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 123727 0.66 0.896436
Target:  5'- gGACCu--GUGCUCggaccUGCGGGGUCGGa -3'
miRNA:   3'- -CUGGucuCGUGGGac---ACGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 50706 0.66 0.896436
Target:  5'- cGGCCcGAGgACCCg--GCGAaGGUCGc -3'
miRNA:   3'- -CUGGuCUCgUGGGacaCGCU-CCAGCc -5'
9292 5' -58.3 NC_002512.2 + 139960 0.66 0.913643
Target:  5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3'
miRNA:   3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 3795 0.68 0.832224
Target:  5'- gGACCGGAGCAguCCCgagaGCGAGccGUCGa -3'
miRNA:   3'- -CUGGUCUCGU--GGGaca-CGCUC--CAGCc -5'
9292 5' -58.3 NC_002512.2 + 178811 0.67 0.876778
Target:  5'- cGGCCAGuugguccgacAGCGCCCggacGUGCucGGGUCGc -3'
miRNA:   3'- -CUGGUC----------UCGUGGGa---CACGc-UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 160763 0.66 0.883536
Target:  5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3'
miRNA:   3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 186069 0.66 0.883536
Target:  5'- aACCucaAGAGCGCCaUGgucgGCGAgaccGGUCGGc -3'
miRNA:   3'- cUGG---UCUCGUGGgACa---CGCU----CCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 155606 0.66 0.886182
Target:  5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3'
miRNA:   3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5'
9292 5' -58.3 NC_002512.2 + 118964 0.66 0.908496
Target:  5'- cACCgAGAGCgcgGCCCUG-GUGAcGGUgGGc -3'
miRNA:   3'- cUGG-UCUCG---UGGGACaCGCU-CCAgCC- -5'
9292 5' -58.3 NC_002512.2 + 201683 0.67 0.862671
Target:  5'- cGGCgAGGGCGgCCgcgucugGUGCGGGaUCGGc -3'
miRNA:   3'- -CUGgUCUCGUgGGa------CACGCUCcAGCC- -5'
9292 5' -58.3 NC_002512.2 + 162130 0.67 0.862671
Target:  5'- cGCCGGAGacgACCCcGgcucGCGAGGcCGGc -3'
miRNA:   3'- cUGGUCUCg--UGGGaCa---CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 201066 0.74 0.478038
Target:  5'- cGACCGG-GC-CCacaUGUGCGGGGUCuGGg -3'
miRNA:   3'- -CUGGUCuCGuGGg--ACACGCUCCAG-CC- -5'
9292 5' -58.3 NC_002512.2 + 106991 0.71 0.659493
Target:  5'- aGGCCGGGaCGCCCgg-GcCGGGGUCGGc -3'
miRNA:   3'- -CUGGUCUcGUGGGacaC-GCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 44346 0.76 0.376625
Target:  5'- cGACCauucgcccuguGGuGCGCCCUGUGUGuGGGUUGGa -3'
miRNA:   3'- -CUGG-----------UCuCGUGGGACACGC-UCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 219216 0.7 0.698254
Target:  5'- uGCCGG-GCcgGCCUcG-GCGAGGUCGGg -3'
miRNA:   3'- cUGGUCuCG--UGGGaCaCGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 156819 0.68 0.790488
Target:  5'- -cUCGGucGGCAaCCUGUGCGAGGccugCGGg -3'
miRNA:   3'- cuGGUC--UCGUgGGACACGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 74572 0.74 0.478038
Target:  5'- cGACCuGGGCGCUCUgGUGCucGAGGcCGGg -3'
miRNA:   3'- -CUGGuCUCGUGGGA-CACG--CUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 124258 0.68 0.790488
Target:  5'- cGACaCGGuGCACCCgacgGCGGcGUCGGa -3'
miRNA:   3'- -CUG-GUCuCGUGGGaca-CGCUcCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 185420 0.68 0.799126
Target:  5'- -cCCGGGGCGCCCUGgaggucuuCGAGGcCGu -3'
miRNA:   3'- cuGGUCUCGUGGGACac------GCUCCaGCc -5'
9292 5' -58.3 NC_002512.2 + 145538 0.68 0.824182
Target:  5'- gGGCCGGAGCAUCCcgcuCGAGGacgCGGc -3'
miRNA:   3'- -CUGGUCUCGUGGGacacGCUCCa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.