miRNA display CGI


Results 41 - 60 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 110520 0.66 0.924194
Target:  5'- gCCGCGCGcCG-CGAGcGAGuCGCCGUg- -3'
miRNA:   3'- -GGCGUGCaGCgGCUU-CUU-GCGGCGgu -5'
9298 3' -58 NC_002512.2 + 18864 0.66 0.924194
Target:  5'- gCCGCGCagugGUCGUagcugaaGAGGAugGacaCGCCGu -3'
miRNA:   3'- -GGCGUG----CAGCGg------CUUCUugCg--GCGGU- -5'
9298 3' -58 NC_002512.2 + 27686 0.66 0.924194
Target:  5'- cCCGCGggucCGUCGgCGAuccGGAACGCgCGUUc -3'
miRNA:   3'- -GGCGU----GCAGCgGCU---UCUUGCG-GCGGu -5'
9298 3' -58 NC_002512.2 + 73959 0.66 0.924194
Target:  5'- gCCGCugcuccCGaaGCUGGAGGACGCgucggCGCCGg -3'
miRNA:   3'- -GGCGu-----GCagCGGCUUCUUGCG-----GCGGU- -5'
9298 3' -58 NC_002512.2 + 30271 0.66 0.924194
Target:  5'- aCGCGCGgagccggCGCCauGGAGGAgGCCcCCGc -3'
miRNA:   3'- gGCGUGCa------GCGG--CUUCUUgCGGcGGU- -5'
9298 3' -58 NC_002512.2 + 205601 0.66 0.924194
Target:  5'- gCCGC-UGUC-CCGcGGGAUGCCGUCn -3'
miRNA:   3'- -GGCGuGCAGcGGCuUCUUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 218777 0.66 0.924194
Target:  5'- cCCGUccggggACGagGCCGAGGcgGACGacaCCGCCGu -3'
miRNA:   3'- -GGCG------UGCagCGGCUUC--UUGC---GGCGGU- -5'
9298 3' -58 NC_002512.2 + 97760 0.66 0.924194
Target:  5'- gCCGCAacCGgCGCUaccGGGCGCUGCCGg -3'
miRNA:   3'- -GGCGU--GCaGCGGcuuCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 26493 0.66 0.924194
Target:  5'- gUGCuCGUCauugaaggGCCu-GGAAUGCCGCCGa -3'
miRNA:   3'- gGCGuGCAG--------CGGcuUCUUGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 225481 0.66 0.924194
Target:  5'- gCCGC-CGUCGaCCGcgaucuacGGGGcCGCCGCgGg -3'
miRNA:   3'- -GGCGuGCAGC-GGC--------UUCUuGCGGCGgU- -5'
9298 3' -58 NC_002512.2 + 90025 0.66 0.924194
Target:  5'- cCCGCAC-UCGUCGAuGAcgaugACGuuGCUg -3'
miRNA:   3'- -GGCGUGcAGCGGCUuCU-----UGCggCGGu -5'
9298 3' -58 NC_002512.2 + 133247 0.66 0.924194
Target:  5'- cCCGUcCGauccCGgCGggGAagAUGCCGCCGa -3'
miRNA:   3'- -GGCGuGCa---GCgGCuuCU--UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 128182 0.66 0.924194
Target:  5'- aCG-AgGUCGCCG-AGcGgGCCGCCGg -3'
miRNA:   3'- gGCgUgCAGCGGCuUCuUgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 200791 0.66 0.924194
Target:  5'- gCCGC-CGcCGCCGAAGAcgagGCGggaCGCg- -3'
miRNA:   3'- -GGCGuGCaGCGGCUUCU----UGCg--GCGgu -5'
9298 3' -58 NC_002512.2 + 140480 0.66 0.924194
Target:  5'- gCCGCcuCG-CGaCCGuAGGAACGCgGUCAa -3'
miRNA:   3'- -GGCGu-GCaGC-GGC-UUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 190407 0.66 0.924194
Target:  5'- gCCGaguucUGUCGCCGggGGcugcgggagcGgGCCGUCAc -3'
miRNA:   3'- -GGCgu---GCAGCGGCuuCU----------UgCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 227653 0.66 0.924194
Target:  5'- gCGCcCGgguCCGGAGGaagagcggcgGCGCCGCCGg -3'
miRNA:   3'- gGCGuGCagcGGCUUCU----------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 5874 0.66 0.918928
Target:  5'- cCCGgGCGUCGuCCGAcu--CGUCGCUc -3'
miRNA:   3'- -GGCgUGCAGC-GGCUucuuGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 85199 0.66 0.918928
Target:  5'- cCCGUggGUCGCCGGGu--CGUCGUCc -3'
miRNA:   3'- -GGCGugCAGCGGCUUcuuGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 50019 0.66 0.918928
Target:  5'- gUGCACGUCGUCGugacGGugGgCGCgCAc -3'
miRNA:   3'- gGCGUGCAGCGGCuu--CUugCgGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.