miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 3' -57.6 NC_002512.2 + 179128 0.76 0.392025
Target:  5'- aUCGCGuGAuCCAGCUCGccggagaggccCAGCAGCUCc -3'
miRNA:   3'- -AGCGC-CU-GGUCGAGCua---------GUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 227017 0.73 0.54702
Target:  5'- cCGgGGACgAGUUCGGUCuGCccaAGCUCg -3'
miRNA:   3'- aGCgCCUGgUCGAGCUAGuCG---UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 103495 0.72 0.57631
Target:  5'- cCGCGGACC-GCUCGccgGGCAGCg- -3'
miRNA:   3'- aGCGCCUGGuCGAGCuagUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 216325 0.72 0.57631
Target:  5'- cUGCGGcCCcGacgCGGUCGGCGGCUCg -3'
miRNA:   3'- aGCGCCuGGuCga-GCUAGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 176149 0.72 0.586156
Target:  5'- cCGCGGACg---UCGcgCAGCAGCUCg -3'
miRNA:   3'- aGCGCCUGgucgAGCuaGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 184580 0.72 0.625788
Target:  5'- cCGCGGGCCGGCagGG-CGGCGGUcCg -3'
miRNA:   3'- aGCGCCUGGUCGagCUaGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 181363 0.72 0.625788
Target:  5'- gCGUGGAUCAGCU---UCAGCAGC-Cg -3'
miRNA:   3'- aGCGCCUGGUCGAgcuAGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 203522 0.71 0.645659
Target:  5'- cCGCcGACCAGCaCGAUCAGgaAGUUCa -3'
miRNA:   3'- aGCGcCUGGUCGaGCUAGUCg-UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 177871 0.71 0.653599
Target:  5'- cUCGCGGAUCGucgacggcgguagguGCUCGAUCagguucgucguccuuAGCAGCg- -3'
miRNA:   3'- -AGCGCCUGGU---------------CGAGCUAG---------------UCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 213076 0.71 0.655583
Target:  5'- cCGCGGGCUAcguGCUCuucGUCGGCGGCg- -3'
miRNA:   3'- aGCGCCUGGU---CGAGc--UAGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 205057 0.71 0.655583
Target:  5'- cCGCGGGCCcggaccuacuGGCUgGAgagCGGCGGCg- -3'
miRNA:   3'- aGCGCCUGG----------UCGAgCUa--GUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 103465 0.71 0.67537
Target:  5'- cCGaGGACgCGGCUCGGgucUCGGCGGCg- -3'
miRNA:   3'- aGCgCCUG-GUCGAGCU---AGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 217141 0.71 0.685218
Target:  5'- -aGCGGGcCCAGCUUGcgCcGCAGgCUCu -3'
miRNA:   3'- agCGCCU-GGUCGAGCuaGuCGUC-GAG- -5'
9320 3' -57.6 NC_002512.2 + 190593 0.71 0.685218
Target:  5'- gUGUGGACCuuccuGCg-GAUCAGCcGCUCg -3'
miRNA:   3'- aGCGCCUGGu----CGagCUAGUCGuCGAG- -5'
9320 3' -57.6 NC_002512.2 + 225106 0.71 0.685218
Target:  5'- gUCGCaaccGGCgCAGCUCGAggcgCAGCAGUUg -3'
miRNA:   3'- -AGCGc---CUG-GUCGAGCUa---GUCGUCGAg -5'
9320 3' -57.6 NC_002512.2 + 202467 0.7 0.714479
Target:  5'- cCGCGGACgcucggcgaCGGCggCGAucugccgacUCAGCAGUUCg -3'
miRNA:   3'- aGCGCCUG---------GUCGa-GCU---------AGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 115461 0.69 0.743145
Target:  5'- aCGCGaACCGGCUgGcgCAG-AGCUCg -3'
miRNA:   3'- aGCGCcUGGUCGAgCuaGUCgUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 195294 0.69 0.752529
Target:  5'- gCGgGGGCCGGCgcCGAagGGCgcgAGCUCa -3'
miRNA:   3'- aGCgCCUGGUCGa-GCUagUCG---UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 149697 0.69 0.761812
Target:  5'- aCGCGGACgaCAGCagcagCGG-CAGCAGCg- -3'
miRNA:   3'- aGCGCCUG--GUCGa----GCUaGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 14471 0.69 0.768247
Target:  5'- cUGUGGugCAGCUCGcgccguucgugaauAUCAGCAGgaUg -3'
miRNA:   3'- aGCGCCugGUCGAGC--------------UAGUCGUCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.