miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 3' -57.6 NC_002512.2 + 9124 0.67 0.847353
Target:  5'- aCGUaGGACCguGGuCUCGGUCaccgAGCAGCUg -3'
miRNA:   3'- aGCG-CCUGG--UC-GAGCUAG----UCGUCGAg -5'
9320 3' -57.6 NC_002512.2 + 14471 0.69 0.768247
Target:  5'- cUGUGGugCAGCUCGcgccguucgugaauAUCAGCAGgaUg -3'
miRNA:   3'- aGCGCCugGUCGAGC--------------UAGUCGUCgaG- -5'
9320 3' -57.6 NC_002512.2 + 70224 0.68 0.814949
Target:  5'- uUCGUacACCGGCUCGGUgcCGGC-GCUCg -3'
miRNA:   3'- -AGCGccUGGUCGAGCUA--GUCGuCGAG- -5'
9320 3' -57.6 NC_002512.2 + 89400 0.66 0.890336
Target:  5'- aUGCGGGCCAgGUUCGcgCGGaaccaGGcCUCg -3'
miRNA:   3'- aGCGCCUGGU-CGAGCuaGUCg----UC-GAG- -5'
9320 3' -57.6 NC_002512.2 + 90291 0.66 0.896776
Target:  5'- gCGCGGACCgGGCcCGAUUgAGCgcggAGCUg -3'
miRNA:   3'- aGCGCCUGG-UCGaGCUAG-UCG----UCGAg -5'
9320 3' -57.6 NC_002512.2 + 90651 0.66 0.890336
Target:  5'- cCGCGGcCgCGGuCUCGGagUCGGCGGC-Cg -3'
miRNA:   3'- aGCGCCuG-GUC-GAGCU--AGUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 91575 0.67 0.869748
Target:  5'- cUCGCGGAUCcGCUaCGAgcgCGcGCGGCa- -3'
miRNA:   3'- -AGCGCCUGGuCGA-GCUa--GU-CGUCGag -5'
9320 3' -57.6 NC_002512.2 + 99640 0.68 0.831492
Target:  5'- cUCGgaGGGCCcggcgcccgAGC-CGAUCcccGGCAGCUCg -3'
miRNA:   3'- -AGCg-CCUGG---------UCGaGCUAG---UCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 101089 0.66 0.902999
Target:  5'- cCGCGGACCAcGC-CGGagacccagagggUgAGCAGCg- -3'
miRNA:   3'- aGCGCCUGGU-CGaGCU------------AgUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 101560 0.69 0.780046
Target:  5'- -aGCGaGACCAGCUCG--CAGCAGa-- -3'
miRNA:   3'- agCGC-CUGGUCGAGCuaGUCGUCgag -5'
9320 3' -57.6 NC_002512.2 + 103465 0.71 0.67537
Target:  5'- cCGaGGACgCGGCUCGGgucUCGGCGGCg- -3'
miRNA:   3'- aGCgCCUG-GUCGAGCU---AGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 103495 0.72 0.57631
Target:  5'- cCGCGGACC-GCUCGccgGGCAGCg- -3'
miRNA:   3'- aGCGCCUGGuCGAGCuagUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 107230 0.69 0.788979
Target:  5'- cCGCGGucaccgucguCCGGCUCGAaacgCAGguGCg- -3'
miRNA:   3'- aGCGCCu---------GGUCGAGCUa---GUCguCGag -5'
9320 3' -57.6 NC_002512.2 + 109849 0.68 0.806439
Target:  5'- gUCGgGGACCGGCgUGG-CGGCGGUg- -3'
miRNA:   3'- -AGCgCCUGGUCGaGCUaGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 110471 0.68 0.79778
Target:  5'- cCGCGGuCCAcGCUccCGAgCAGCGGCa- -3'
miRNA:   3'- aGCGCCuGGU-CGA--GCUaGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 110667 0.69 0.780046
Target:  5'- cCGCGGG-CAGC-CGGUCcuGguGCUCg -3'
miRNA:   3'- aGCGCCUgGUCGaGCUAGu-CguCGAG- -5'
9320 3' -57.6 NC_002512.2 + 111265 0.68 0.830681
Target:  5'- aCGCGGACgAGCUUGAugUCGacgucccGCGGC-Ca -3'
miRNA:   3'- aGCGCCUGgUCGAGCU--AGU-------CGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 115461 0.69 0.743145
Target:  5'- aCGCGaACCGGCUgGcgCAG-AGCUCg -3'
miRNA:   3'- aGCGCcUGGUCGAgCuaGUCgUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 129924 0.66 0.914781
Target:  5'- cCGCGGgGCCAgGC-CGAUCaggcaccggcGGCAGCa- -3'
miRNA:   3'- aGCGCC-UGGU-CGaGCUAG----------UCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 131343 0.69 0.792516
Target:  5'- cCGCGGAacgccgggcgaggucCCAGC-CGGcgCGGUGGCUCu -3'
miRNA:   3'- aGCGCCU---------------GGUCGaGCUa-GUCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.