miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 5' -64.7 NC_002512.2 + 112929 0.76 0.183689
Target:  5'- cGGCGgCCCGGUggcgcgCGAGCCcgcggaCCGGGUCGa -3'
miRNA:   3'- aCCGCgGGGCCA------GCUCGG------GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 94904 0.74 0.235298
Target:  5'- aGGCGUCCCGGUCGccgggcagacAGCUCCGGaUCa -3'
miRNA:   3'- aCCGCGGGGCCAGC----------UCGGGGCUcAGc -5'
9320 5' -64.7 NC_002512.2 + 153025 0.73 0.290427
Target:  5'- cGGCGggagcgguCCCCGGUCGGGucggcgggagcgguCCCCG-GUCGg -3'
miRNA:   3'- aCCGC--------GGGGCCAGCUC--------------GGGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 152975 0.73 0.290427
Target:  5'- cGGCGggagcgguCCCCGGUCGGGucggcgggagcgguCCCCG-GUCGg -3'
miRNA:   3'- aCCGC--------GGGGCCAGCUC--------------GGGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 152743 0.72 0.338254
Target:  5'- aGGCGUUCCGGcCGGGagCCCG-GUCGa -3'
miRNA:   3'- aCCGCGGGGCCaGCUCg-GGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 223057 0.72 0.338254
Target:  5'- aGGUGCCCCuGGUcgccaccguggcCGAGaCCCGGGUCc -3'
miRNA:   3'- aCCGCGGGG-CCA------------GCUCgGGGCUCAGc -5'
9320 5' -64.7 NC_002512.2 + 186089 0.72 0.344532
Target:  5'- cGGCGagaCCGGUCGgcuccugcugugcGGCCCCGAGcUCu -3'
miRNA:   3'- aCCGCgg-GGCCAGC-------------UCGGGGCUC-AGc -5'
9320 5' -64.7 NC_002512.2 + 90646 0.71 0.352318
Target:  5'- cGGCGCCgCGGcCGcGGUCUCgGAGUCGg -3'
miRNA:   3'- aCCGCGGgGCCaGC-UCGGGG-CUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 186827 0.71 0.352318
Target:  5'- cGGUGCCUCGG-CGAgGCCCUGcgcGUCGc -3'
miRNA:   3'- aCCGCGGGGCCaGCU-CGGGGCu--CAGC- -5'
9320 5' -64.7 NC_002512.2 + 212938 0.71 0.362407
Target:  5'- gGGCGgCCCGGUcCGAGUcgcccuacggcgccuCCgGGGUCGa -3'
miRNA:   3'- aCCGCgGGGCCA-GCUCG---------------GGgCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 208424 0.71 0.366792
Target:  5'- gGGCGCcgcuCCCGG-CGccGGCCCCcgaucGAGUCGg -3'
miRNA:   3'- aCCGCG----GGGCCaGC--UCGGGG-----CUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 157089 0.71 0.380916
Target:  5'- cGGCGCCCaCGG-CGGGCCCgucccggCGAcGUCc -3'
miRNA:   3'- aCCGCGGG-GCCaGCUCGGG-------GCU-CAGc -5'
9320 5' -64.7 NC_002512.2 + 150650 0.71 0.38167
Target:  5'- gUGGCGCUgCGcagcUCGAGCCUCGAGguccgCGg -3'
miRNA:   3'- -ACCGCGGgGCc---AGCUCGGGGCUCa----GC- -5'
9320 5' -64.7 NC_002512.2 + 157065 0.71 0.389258
Target:  5'- gGGCGUCCCGG---GGUCCgGGGUCGc -3'
miRNA:   3'- aCCGCGGGGCCagcUCGGGgCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 155646 0.7 0.403945
Target:  5'- cGGCGCUucggcguCCGGcCGuucGCCCCGcGUCGg -3'
miRNA:   3'- aCCGCGG-------GGCCaGCu--CGGGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 153270 0.7 0.404728
Target:  5'- cGGCggGUCCUGGUCGgcuGGCUCCGcugGGUCGg -3'
miRNA:   3'- aCCG--CGGGGCCAGC---UCGGGGC---UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 126946 0.7 0.412607
Target:  5'- -cGCGCCCCGGUCGAcccucuggcGCUCCcaguagGGGUCc -3'
miRNA:   3'- acCGCGGGGCCAGCU---------CGGGG------CUCAGc -5'
9320 5' -64.7 NC_002512.2 + 158622 0.7 0.415785
Target:  5'- cUGGCgGCCCUGGacggcuccgaccccuUCGA-CCCCGAcGUCGa -3'
miRNA:   3'- -ACCG-CGGGGCC---------------AGCUcGGGGCU-CAGC- -5'
9320 5' -64.7 NC_002512.2 + 184684 0.7 0.418178
Target:  5'- cGGCcguccgcgccgccgGUCCCGGUCGAGaCCuCCGAGg-- -3'
miRNA:   3'- aCCG--------------CGGGGCCAGCUC-GG-GGCUCagc -5'
9320 5' -64.7 NC_002512.2 + 164250 0.7 0.42058
Target:  5'- cGGCGCCgUGGcggGGGCCgUCGGGUCGa -3'
miRNA:   3'- aCCGCGGgGCCag-CUCGG-GGCUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.