miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 5' -64.7 NC_002512.2 + 74578 0.66 0.651892
Target:  5'- gGGCGCUCUGGUgCucgaggccgGGGCCCUccGUCGg -3'
miRNA:   3'- aCCGCGGGGCCA-G---------CUCGGGGcuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 77566 0.68 0.559064
Target:  5'- gGGuCGCCCaCGGgcgucCGAGCCacgCCGAG-CGg -3'
miRNA:   3'- aCC-GCGGG-GCCa----GCUCGG---GGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 90574 0.68 0.531802
Target:  5'- gGGCgacgGCCCCGGUCuccuucCCCCGGGgCGg -3'
miRNA:   3'- aCCG----CGGGGCCAGcuc---GGGGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 90646 0.71 0.352318
Target:  5'- cGGCGCCgCGGcCGcGGUCUCgGAGUCGg -3'
miRNA:   3'- aCCGCGGgGCCaGC-UCGGGG-CUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 94904 0.74 0.235298
Target:  5'- aGGCGUCCCGGUCGccgggcagacAGCUCCGGaUCa -3'
miRNA:   3'- aCCGCGGGGCCAGC----------UCGGGGCUcAGc -5'
9320 5' -64.7 NC_002512.2 + 96300 0.68 0.513896
Target:  5'- aGGcCGgCCCGcUCGGGuCCCCGgcGGUCGa -3'
miRNA:   3'- aCC-GCgGGGCcAGCUC-GGGGC--UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 98129 0.66 0.622046
Target:  5'- cGGgGCgCUGGUCGucgcggccgcccGCCCCGgcGGUCGc -3'
miRNA:   3'- aCCgCGgGGCCAGCu-----------CGGGGC--UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 99221 0.7 0.42058
Target:  5'- --cCGUCCCGGUCcucggaGAGCCCCGcgcagaAGUCGa -3'
miRNA:   3'- accGCGGGGCCAG------CUCGGGGC------UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 102237 0.66 0.633241
Target:  5'- cGGCGCucuguccgaCCCGGgccCGGGUCCgGGcGUCGu -3'
miRNA:   3'- aCCGCG---------GGGCCa--GCUCGGGgCU-CAGC- -5'
9320 5' -64.7 NC_002512.2 + 102902 0.69 0.49624
Target:  5'- cGuGCGCCUggcgCGGUCGAcggccacggGCCCCaGGUCGu -3'
miRNA:   3'- aC-CGCGGG----GCCAGCU---------CGGGGcUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 104996 0.69 0.465181
Target:  5'- aGGUaGCCCgGGuuccgcacgggcgcgUCGAGCCCCGcgcaGGUCa -3'
miRNA:   3'- aCCG-CGGGgCC---------------AGCUCGGGGC----UCAGc -5'
9320 5' -64.7 NC_002512.2 + 105087 0.69 0.487515
Target:  5'- cGGCGgUCgGGUCGAcgugucuCCCCGGGUCc -3'
miRNA:   3'- aCCGCgGGgCCAGCUc------GGGGCUCAGc -5'
9320 5' -64.7 NC_002512.2 + 108106 0.66 0.64257
Target:  5'- cGGCGUCCCcgccucggcGGUCcgcGGUCCCGAGagGc -3'
miRNA:   3'- aCCGCGGGG---------CCAGc--UCGGGGCUCagC- -5'
9320 5' -64.7 NC_002512.2 + 111343 0.69 0.453377
Target:  5'- uUGGCGUCCCGGgcgcgcaCGAGgacgaCCCGGGgcUCGa -3'
miRNA:   3'- -ACCGCGGGGCCa------GCUCg----GGGCUC--AGC- -5'
9320 5' -64.7 NC_002512.2 + 112929 0.76 0.183689
Target:  5'- cGGCGgCCCGGUggcgcgCGAGCCcgcggaCCGGGUCGa -3'
miRNA:   3'- aCCGCgGGGCCA------GCUCGG------GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 117125 0.67 0.595978
Target:  5'- cGGgGCCCC-GUCGgcGGCgUUCGAGUCGc -3'
miRNA:   3'- aCCgCGGGGcCAGC--UCG-GGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 126380 0.66 0.64257
Target:  5'- cUGGcCGCCCgGGagagCGcccggGGCCCCGGG-CGc -3'
miRNA:   3'- -ACC-GCGGGgCCa---GC-----UCGGGGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 126509 0.68 0.556319
Target:  5'- gGGCGCgagccUCUGGUCGgacgacccgaccgcGGCCCCGGacucGUCGa -3'
miRNA:   3'- aCCGCG-----GGGCCAGC--------------UCGGGGCU----CAGC- -5'
9320 5' -64.7 NC_002512.2 + 126946 0.7 0.412607
Target:  5'- -cGCGCCCCGGUCGAcccucuggcGCUCCcaguagGGGUCc -3'
miRNA:   3'- acCGCGGGGCCAGCU---------CGGGG------CUCAGc -5'
9320 5' -64.7 NC_002512.2 + 128014 0.69 0.49624
Target:  5'- aGGCagaacagacccGCCCCGGcgUCGAagagcugcacgGCCCCGAcgGUCGc -3'
miRNA:   3'- aCCG-----------CGGGGCC--AGCU-----------CGGGGCU--CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.