Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9335 | 3' | -62.1 | NC_002512.2 | + | 217596 | 0.67 | 0.735334 |
Target: 5'- -gCCGCCucgggggucGUCGGcgacucGGGCGGCGCCacggGUCUc -3' miRNA: 3'- gaGGCGG---------CAGCU------CCUGCCGCGG----CAGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 181406 | 0.67 | 0.735334 |
Target: 5'- cCUCCGCCG---GGGACGcGUucaggaugGCCGUCa -3' miRNA: 3'- -GAGGCGGCagcUCCUGC-CG--------CGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 154650 | 0.67 | 0.735334 |
Target: 5'- -aCCGCCGUccCGAGcGACcguccgacgucgGGCGaCCGUCc -3' miRNA: 3'- gaGGCGGCA--GCUC-CUG------------CCGC-GGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 111634 | 0.67 | 0.735334 |
Target: 5'- --gCGCUGUagaCGuggugcuccAGGACGGUGCCGUCc -3' miRNA: 3'- gagGCGGCA---GC---------UCCUGCCGCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 109839 | 0.67 | 0.726248 |
Target: 5'- -aCCGCCGggcgUCGGGGAcCGGCGUgG-Cg -3' miRNA: 3'- gaGGCGGC----AGCUCCU-GCCGCGgCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 182449 | 0.67 | 0.726248 |
Target: 5'- cCUCCGCCGUgCGGGcG-UGGUGCuCGUg- -3' miRNA: 3'- -GAGGCGGCA-GCUC-CuGCCGCG-GCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 224922 | 0.67 | 0.726248 |
Target: 5'- cCUCCGUCG-CGGGGAccggguccgugcCGGUGUCGcUCg -3' miRNA: 3'- -GAGGCGGCaGCUCCU------------GCCGCGGC-AGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 226530 | 0.67 | 0.723508 |
Target: 5'- -gCCGCCGUCcucgaucggaggaaGAGGAaGGCGUCGg-- -3' miRNA: 3'- gaGGCGGCAG--------------CUCCUgCCGCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185029 | 0.67 | 0.723508 |
Target: 5'- -gCCGUCGUCGGGGAgagcccuaggauccUGGaCGCCGa-- -3' miRNA: 3'- gaGGCGGCAGCUCCU--------------GCC-GCGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 222583 | 0.67 | 0.717093 |
Target: 5'- -cCCGCCGUCGcGGAggaGGC-CUGUCc -3' miRNA: 3'- gaGGCGGCAGCuCCUg--CCGcGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 102299 | 0.67 | 0.717093 |
Target: 5'- -aCCGCCagggcgacGUCGcGGACGGU-CCGUCg -3' miRNA: 3'- gaGGCGG--------CAGCuCCUGCCGcGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 98814 | 0.67 | 0.716174 |
Target: 5'- -gCgGCCGgagCGAcGGaucggccuccggcGCGGCGCCGUCc -3' miRNA: 3'- gaGgCGGCa--GCU-CC-------------UGCCGCGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 91874 | 0.67 | 0.707876 |
Target: 5'- -gCCGCCGUcCGGcgcGGGCGGCGgCG-Cg -3' miRNA: 3'- gaGGCGGCA-GCU---CCUGCCGCgGCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 212458 | 0.67 | 0.698603 |
Target: 5'- -aCCGCCG-CGAGGAgGGCauCCGcCUc -3' miRNA: 3'- gaGGCGGCaGCUCCUgCCGc-GGCaGA- -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 222646 | 0.67 | 0.698603 |
Target: 5'- gCUCCGCCG-CGAcGGcCGGCcggGCCGa-- -3' miRNA: 3'- -GAGGCGGCaGCU-CCuGCCG---CGGCaga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 223263 | 0.67 | 0.698603 |
Target: 5'- gUCCGCguCGUCgGGGGGCGGgaCGCCG-Cg -3' miRNA: 3'- gAGGCG--GCAG-CUCCUGCC--GCGGCaGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 189239 | 0.67 | 0.689283 |
Target: 5'- -gUCGCCGUCGcGGACGuCaCCGUCg -3' miRNA: 3'- gaGGCGGCAGCuCCUGCcGcGGCAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185858 | 0.67 | 0.689283 |
Target: 5'- -gCgGUaCGUCGAGGAgGGCGCC-UCg -3' miRNA: 3'- gaGgCG-GCAGCUCCUgCCGCGGcAGa -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 221753 | 0.68 | 0.679923 |
Target: 5'- --gCGCCGUCGAacggcagcuGGGCGGCcGUCGUg- -3' miRNA: 3'- gagGCGGCAGCU---------CCUGCCG-CGGCAga -5' |
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9335 | 3' | -62.1 | NC_002512.2 | + | 185362 | 0.68 | 0.677108 |
Target: 5'- -aUCGCCGUCGAcugcgacaccuucgGcGGCGGCugcgagGCCGUCUu -3' miRNA: 3'- gaGGCGGCAGCU--------------C-CUGCCG------CGGCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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