miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 101905 0.68 0.632753
Target:  5'- --aCGCCGaCGGGGGCGGCGUguUCUc -3'
miRNA:   3'- gagGCGGCaGCUCCUGCCGCGgcAGA- -5'
9335 3' -62.1 NC_002512.2 + 102299 0.67 0.717093
Target:  5'- -aCCGCCagggcgacGUCGcGGACGGU-CCGUCg -3'
miRNA:   3'- gaGGCGG--------CAGCuCCUGCCGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 102402 0.66 0.744343
Target:  5'- -cCCGCC--CGAGGGCGGCgGCCa--- -3'
miRNA:   3'- gaGGCGGcaGCUCCUGCCG-CGGcaga -5'
9335 3' -62.1 NC_002512.2 + 105552 0.68 0.651667
Target:  5'- aCUCC-CCGUUGAcggucaggcucaGGACGuaGCCGUCc -3'
miRNA:   3'- -GAGGcGGCAGCU------------CCUGCcgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 105947 0.68 0.642213
Target:  5'- -cCCGCCGgcaCGAGucuGACGGCcagcccGCCGUCc -3'
miRNA:   3'- gaGGCGGCa--GCUC---CUGCCG------CGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 108162 0.66 0.779469
Target:  5'- cCUCCGgCGUCGc---CGGCGCCuUCUg -3'
miRNA:   3'- -GAGGCgGCAGCuccuGCCGCGGcAGA- -5'
9335 3' -62.1 NC_002512.2 + 108677 0.73 0.401446
Target:  5'- -cCCGCCGaCGAcGAgGGCGCUGUCg -3'
miRNA:   3'- gaGGCGGCaGCUcCUgCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 109839 0.67 0.726248
Target:  5'- -aCCGCCGggcgUCGGGGAcCGGCGUgG-Cg -3'
miRNA:   3'- gaGGCGGC----AGCUCCU-GCCGCGgCaGa -5'
9335 3' -62.1 NC_002512.2 + 111634 0.67 0.735334
Target:  5'- --gCGCUGUagaCGuggugcuccAGGACGGUGCCGUCc -3'
miRNA:   3'- gagGCGGCA---GC---------UCCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 122094 0.7 0.557549
Target:  5'- --gCGCCGgacgCGAGGuCGGCGCugaCGUCg -3'
miRNA:   3'- gagGCGGCa---GCUCCuGCCGCG---GCAGa -5'
9335 3' -62.1 NC_002512.2 + 125097 0.66 0.787986
Target:  5'- -cCCGCCGcgCGcGGACcccgccgacGCGCCGUCc -3'
miRNA:   3'- gaGGCGGCa-GCuCCUGc--------CGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 126656 0.69 0.584625
Target:  5'- -gCgGCCGUCGAcGGGCGGCgacgcgaGCCGcCUc -3'
miRNA:   3'- gaGgCGGCAGCU-CCUGCCG-------CGGCaGA- -5'
9335 3' -62.1 NC_002512.2 + 127474 0.7 0.56685
Target:  5'- aCUCUGCCGUCc-GGacGCGGCGaCGUCg -3'
miRNA:   3'- -GAGGCGGCAGcuCC--UGCCGCgGCAGa -5'
9335 3' -62.1 NC_002512.2 + 128378 0.71 0.459081
Target:  5'- cCUCC-CCGUCGccGGCGGCGgaccCCGUCUc -3'
miRNA:   3'- -GAGGcGGCAGCucCUGCCGC----GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 132148 0.68 0.661108
Target:  5'- -aCCGCCaccUCGAGGucggugagcGCGGCGUCGUg- -3'
miRNA:   3'- gaGGCGGc--AGCUCC---------UGCCGCGGCAga -5'
9335 3' -62.1 NC_002512.2 + 132523 0.78 0.188298
Target:  5'- -gCCGCCG-CGGuccccgcuccgcGGGCGGCGCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCU------------CCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 133886 0.66 0.762103
Target:  5'- uUCCGCCuggCGGucGCGGCGCCGg-- -3'
miRNA:   3'- gAGGCGGca-GCUccUGCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 143191 0.66 0.779469
Target:  5'- --gCGCCcugcaCGAGGGUGGUGCCGUCc -3'
miRNA:   3'- gagGCGGca---GCUCCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 145320 0.69 0.613836
Target:  5'- uUCCGCaacuaCGUCGAGGuCGaGCGCC-UCg -3'
miRNA:   3'- gAGGCG-----GCAGCUCCuGC-CGCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 145685 0.66 0.753269
Target:  5'- gUCCGCgGaCGAGuGGCuGCGCCG-CUg -3'
miRNA:   3'- gAGGCGgCaGCUC-CUGcCGCGGCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.