miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 3147 0.73 0.393595
Target:  5'- cCUCCGCCGUCuccGGGACaGCcucGCUGUCUc -3'
miRNA:   3'- -GAGGCGGCAGc--UCCUGcCG---CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 3198 0.66 0.796383
Target:  5'- -gUCGUCGUCGAacGuGuCGGuCGCCGUCa -3'
miRNA:   3'- gaGGCGGCAGCU--C-CuGCC-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 33180 0.66 0.744343
Target:  5'- gUCaagaGCCgGUCGGgcuggcGGACGGUGCCGcUCg -3'
miRNA:   3'- gAGg---CGG-CAGCU------CCUGCCGCGGC-AGa -5'
9335 3' -62.1 NC_002512.2 + 73588 0.68 0.642213
Target:  5'- -cCCGCCGaaaGAGGACGuGCaCCGUUg -3'
miRNA:   3'- gaGGCGGCag-CUCCUGC-CGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 75734 0.66 0.779469
Target:  5'- gUCCGCCGaaCGGGaGGCGaccgaGCGCgCGUCg -3'
miRNA:   3'- gAGGCGGCa-GCUC-CUGC-----CGCG-GCAGa -5'
9335 3' -62.1 NC_002512.2 + 76474 0.66 0.762103
Target:  5'- uUCCGacaGUCGAGGACcugGGCcUCGUCg -3'
miRNA:   3'- gAGGCgg-CAGCUCCUG---CCGcGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 87974 0.69 0.613836
Target:  5'- -aCC-CCGUCGGGGccGCGGCGCCc--- -3'
miRNA:   3'- gaGGcGGCAGCUCC--UGCCGCGGcaga -5'
9335 3' -62.1 NC_002512.2 + 90383 0.68 0.651667
Target:  5'- gUCUGCaCGcUCGAGGucuugcCGGCGCCGg-- -3'
miRNA:   3'- gAGGCG-GC-AGCUCCu-----GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 91874 0.67 0.707876
Target:  5'- -gCCGCCGUcCGGcgcGGGCGGCGgCG-Cg -3'
miRNA:   3'- gaGGCGGCA-GCU---CCUGCCGCgGCaGa -5'
9335 3' -62.1 NC_002512.2 + 95143 0.66 0.787139
Target:  5'- gUCCGCCccggcggGUCGAGGAcCGGaGCCuUCc -3'
miRNA:   3'- gAGGCGG-------CAGCUCCU-GCCgCGGcAGa -5'
9335 3' -62.1 NC_002512.2 + 95555 0.66 0.779469
Target:  5'- gCUCgGCCGcggCGAGuccguCGGCGCCGg-- -3'
miRNA:   3'- -GAGgCGGCa--GCUCcu---GCCGCGGCaga -5'
9335 3' -62.1 NC_002512.2 + 95686 0.7 0.548292
Target:  5'- gUCCGCCGggccuccggCGGGGACGGgggGCCGg-- -3'
miRNA:   3'- gAGGCGGCa--------GCUCCUGCCg--CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 95742 0.69 0.613836
Target:  5'- -cCCGCCGgCcGGGACGcGCGCCG-Cg -3'
miRNA:   3'- gaGGCGGCaGcUCCUGC-CGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 96113 0.66 0.744343
Target:  5'- -gCCGCCGUCGucGuCGuCGUCGUCg -3'
miRNA:   3'- gaGGCGGCAGCucCuGCcGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 98814 0.67 0.716174
Target:  5'- -gCgGCCGgagCGAcGGaucggccuccggcGCGGCGCCGUCc -3'
miRNA:   3'- gaGgCGGCa--GCU-CC-------------UGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 100073 0.66 0.770839
Target:  5'- -gCCGCgGgcCGGGGACGGaGCgGUCa -3'
miRNA:   3'- gaGGCGgCa-GCUCCUGCCgCGgCAGa -5'
9335 3' -62.1 NC_002512.2 + 100871 0.66 0.753269
Target:  5'- -aCUGCagGUUGAGGaaGCGGaUGCCGUCg -3'
miRNA:   3'- gaGGCGg-CAGCUCC--UGCC-GCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 100968 0.67 0.735334
Target:  5'- -gUCGCUGUCGAGGGCgggaaaGGCGaccaCGUUg -3'
miRNA:   3'- gaGGCGGCAGCUCCUG------CCGCg---GCAGa -5'
9335 3' -62.1 NC_002512.2 + 101412 0.66 0.779469
Target:  5'- gCUCCGCUucCGAGGgcacaGCGGCgGCCGg-- -3'
miRNA:   3'- -GAGGCGGcaGCUCC-----UGCCG-CGGCaga -5'
9335 3' -62.1 NC_002512.2 + 101759 0.74 0.334476
Target:  5'- -gCCGCCGccugaccuUCGGcGaGACGGCGCCGUCc -3'
miRNA:   3'- gaGGCGGC--------AGCU-C-CUGCCGCGGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.