miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 3' -62.1 NC_002512.2 + 207769 0.79 0.167212
Target:  5'- -gCCGCCGUgGugguugcGGGACGGCGUCGUCUc -3'
miRNA:   3'- gaGGCGGCAgC-------UCCUGCCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 132523 0.78 0.188298
Target:  5'- -gCCGCCG-CGGuccccgcuccgcGGGCGGCGCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCU------------CCUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 166438 0.74 0.320749
Target:  5'- -cCCGCCGUCcuccggGGGcGACGGCGCCGggCUc -3'
miRNA:   3'- gaGGCGGCAG------CUC-CUGCCGCGGCa-GA- -5'
9335 3' -62.1 NC_002512.2 + 101759 0.74 0.334476
Target:  5'- -gCCGCCGccugaccuUCGGcGaGACGGCGCCGUCc -3'
miRNA:   3'- gaGGCGGC--------AGCU-C-CUGCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 173529 0.74 0.341499
Target:  5'- aUCCGuCCGUCGGGGccgucugcccggGCuGUGCCGUCUa -3'
miRNA:   3'- gAGGC-GGCAGCUCC------------UGcCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 164731 0.73 0.378194
Target:  5'- aCUCCGaCGUCGAGGACcgguagcGCGCCGcCa -3'
miRNA:   3'- -GAGGCgGCAGCUCCUGc------CGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 3147 0.73 0.393595
Target:  5'- cCUCCGCCGUCuccGGGACaGCcucGCUGUCUc -3'
miRNA:   3'- -GAGGCGGCAGc--UCCUGcCG---CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 146107 0.73 0.401446
Target:  5'- cCUCgGCgG-CGGcGGCGGCGCCGUCUu -3'
miRNA:   3'- -GAGgCGgCaGCUcCUGCCGCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 149153 0.73 0.401446
Target:  5'- -aCCGCCG-CGGGGcCGGUGCCGcCc -3'
miRNA:   3'- gaGGCGGCaGCUCCuGCCGCGGCaGa -5'
9335 3' -62.1 NC_002512.2 + 108677 0.73 0.401446
Target:  5'- -cCCGCCGaCGAcGAgGGCGCUGUCg -3'
miRNA:   3'- gaGGCGGCaGCUcCUgCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 220378 0.72 0.409397
Target:  5'- -gCCGCCGUgcUGGGGcCGGCcGUCGUCUa -3'
miRNA:   3'- gaGGCGGCA--GCUCCuGCCG-CGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 224961 0.72 0.417445
Target:  5'- gCUCCGCCGUCuacccgcuGGGCGGCGgCGg-- -3'
miRNA:   3'- -GAGGCGGCAGcu------CCUGCCGCgGCaga -5'
9335 3' -62.1 NC_002512.2 + 215038 0.72 0.425589
Target:  5'- cCUCUGCUGUccCGAGGAgcucaccgucguCGGCGgCGUCUa -3'
miRNA:   3'- -GAGGCGGCA--GCUCCU------------GCCGCgGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 201869 0.72 0.450575
Target:  5'- -cCUGCgGUcCGAGGACGGCGgcggcuucuCCGUCUc -3'
miRNA:   3'- gaGGCGgCA-GCUCCUGCCGC---------GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 128378 0.71 0.459081
Target:  5'- cCUCC-CCGUCGccGGCGGCGgaccCCGUCUc -3'
miRNA:   3'- -GAGGcGGCAGCucCUGCCGC----GGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 190965 0.71 0.459081
Target:  5'- -cCCGCCG-CGGcGGccccucCGGCGCCGUCg -3'
miRNA:   3'- gaGGCGGCaGCU-CCu-----GCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 156605 0.71 0.476345
Target:  5'- -aCCGCCauGUaCGAGGA-GGCGCUGUCc -3'
miRNA:   3'- gaGGCGG--CA-GCUCCUgCCGCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 215639 0.71 0.485097
Target:  5'- uCUUCGCCGU-GGGGcuGCGG-GCCGUCa -3'
miRNA:   3'- -GAGGCGGCAgCUCC--UGCCgCGGCAGa -5'
9335 3' -62.1 NC_002512.2 + 220539 0.71 0.493925
Target:  5'- -gCUGCUGcgCGAGGGCGucaCGCCGUCUa -3'
miRNA:   3'- gaGGCGGCa-GCUCCUGCc--GCGGCAGA- -5'
9335 3' -62.1 NC_002512.2 + 201613 0.71 0.493925
Target:  5'- uCUCCGCCagcGcCGAGcGguaGGCGCCGUCg -3'
miRNA:   3'- -GAGGCGG---CaGCUC-Cug-CCGCGGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.