Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 5' | -56.9 | NC_002512.2 | + | 173633 | 0.7 | 0.778404 |
Target: 5'- ---cGCGGCGGCgaaccccgGGUCgggggCGGCGGCa -3' miRNA: 3'- agucCGCCGCCGa-------CCAGaa---GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 178804 | 0.68 | 0.845981 |
Target: 5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3' miRNA: 3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179460 | 0.68 | 0.845201 |
Target: 5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3' miRNA: 3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179517 | 0.67 | 0.907995 |
Target: 5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3' miRNA: 3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 180279 | 0.71 | 0.693178 |
Target: 5'- cUCAuGGCGGCGGCguucccGUCgcccUCGACAGg -3' miRNA: 3'- -AGU-CCGCCGCCGac----CAGa---AGCUGUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 181592 | 0.72 | 0.663601 |
Target: 5'- gCAGG-GGCGGCgGGUCcgCGACGu- -3' miRNA: 3'- aGUCCgCCGCCGaCCAGaaGCUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184758 | 0.67 | 0.889204 |
Target: 5'- --cGGCgGGCGGCccgUGGUCgUCGACc-- -3' miRNA: 3'- aguCCG-CCGCCG---ACCAGaAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184901 | 0.66 | 0.937703 |
Target: 5'- gCGGGCGGCGGCgcuacugcccCUUCGcCGAg -3' miRNA: 3'- aGUCCGCCGCCGacca------GAAGCuGUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 185385 | 0.66 | 0.934376 |
Target: 5'- --cGGCGGCGGCUGcgaggccGUCUUCuccgccCGGCc -3' miRNA: 3'- aguCCGCCGCCGAC-------CAGAAGcu----GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 187653 | 0.74 | 0.554803 |
Target: 5'- -aGGGCGGCGGCcacGGUCacggucaCGGCGGCg -3' miRNA: 3'- agUCCGCCGCCGa--CCAGaa-----GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 188658 | 0.67 | 0.907995 |
Target: 5'- --cGGCGGCGGCccGUCgucCGACcGCg -3' miRNA: 3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 188778 | 0.74 | 0.54509 |
Target: 5'- uUCcGGCGGCGGCUccGGcC-UCGGCGGCc -3' miRNA: 3'- -AGuCCGCCGCCGA--CCaGaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 189058 | 0.69 | 0.830047 |
Target: 5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3' miRNA: 3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 189915 | 0.78 | 0.337483 |
Target: 5'- -gAGGaCGGCGGCUccGGUCU-CGGCGGCg -3' miRNA: 3'- agUCC-GCCGCCGA--CCAGAaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 190206 | 0.67 | 0.895686 |
Target: 5'- -aAGGuCGGCGGCgcGGUCgUCcggGACGGCc -3' miRNA: 3'- agUCC-GCCGCCGa-CCAGaAG---CUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 195003 | 0.67 | 0.889204 |
Target: 5'- -aGGGCGaCGGC-GGUCccggCGGCGGCg -3' miRNA: 3'- agUCCGCcGCCGaCCAGaa--GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 196422 | 0.69 | 0.787367 |
Target: 5'- -gGGGCGGCGGCcgGGUCgggagaggUCGGgGc- -3' miRNA: 3'- agUCCGCCGCCGa-CCAGa-------AGCUgUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 197847 | 0.69 | 0.830047 |
Target: 5'- -gGGGCGGCGGgaGGcccUCUUcaacCGACuGCg -3' miRNA: 3'- agUCCGCCGCCgaCC---AGAA----GCUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 201056 | 0.66 | 0.923732 |
Target: 5'- gCAGGCGGaucgaccgGGCccacaugugcggGGUCUggGACAGCa -3' miRNA: 3'- aGUCCGCCg-------CCGa-----------CCAGAagCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 201355 | 0.77 | 0.400164 |
Target: 5'- aUCGGGCGGCGGC-GGacc-CGACAGCu -3' miRNA: 3'- -AGUCCGCCGCCGaCCagaaGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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