miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 133079 0.69 0.804889
Target:  5'- gCAGGCGGUGGgUccGGUUggCGcGCAGCg -3'
miRNA:   3'- aGUCCGCCGCCgA--CCAGaaGC-UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 134173 0.66 0.929936
Target:  5'- cCGGacccUGGCGGCgu-UCUUCGGCGACg -3'
miRNA:   3'- aGUCc---GCCGCCGaccAGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 146116 0.69 0.804889
Target:  5'- --cGGCGGCGGCgccGUCUUCuGCAc- -3'
miRNA:   3'- aguCCGCCGCCGac-CAGAAGcUGUug -5'
9335 5' -56.9 NC_002512.2 + 146725 0.68 0.853677
Target:  5'- -gGGGCGGCGGCcgcGGcCgccgggccCGACGACc -3'
miRNA:   3'- agUCCGCCGCCGa--CCaGaa------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 149494 0.66 0.913817
Target:  5'- aUCGGG-GGCGGgUGGUCaaaaGGCcGCg -3'
miRNA:   3'- -AGUCCgCCGCCgACCAGaag-CUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 151040 0.79 0.282259
Target:  5'- -gAGGCGGCGGCccgucacgcGGUCcUCGACGGCg -3'
miRNA:   3'- agUCCGCCGCCGa--------CCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 152682 0.67 0.887218
Target:  5'- -gGGGcCGGCGGCcGGUCUcgucgcguccccggUCGggguGCGGCg -3'
miRNA:   3'- agUCC-GCCGCCGaCCAGA--------------AGC----UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 153373 0.74 0.554803
Target:  5'- -uGGGCGGCGGCUGG-CggucCGgaGCGACg -3'
miRNA:   3'- agUCCGCCGCCGACCaGaa--GC--UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 153404 0.66 0.919416
Target:  5'- -gAGcGCGGCGGC-GGUCgaggUGGCGGa -3'
miRNA:   3'- agUC-CGCCGCCGaCCAGaa--GCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 156473 0.66 0.939555
Target:  5'- cUCGGG-GGCGGCgGG-CU-CGGCGGg -3'
miRNA:   3'- -AGUCCgCCGCCGaCCaGAaGCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 156516 0.69 0.830047
Target:  5'- -uGGGCGGCggGGCgcgggGGUC--CGGCGGCg -3'
miRNA:   3'- agUCCGCCG--CCGa----CCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 157163 0.7 0.750806
Target:  5'- gCGGGCcgGGCGGCgUGGg---CGGCGGCg -3'
miRNA:   3'- aGUCCG--CCGCCG-ACCagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 157799 0.69 0.830047
Target:  5'- cCGGGCGGUGuGCaGGUCgcugCGGgGGCc -3'
miRNA:   3'- aGUCCGCCGC-CGaCCAGaa--GCUgUUG- -5'
9335 5' -56.9 NC_002512.2 + 158966 0.66 0.924789
Target:  5'- --cGGCGGCGaGC-GGU--UCGGCGGCc -3'
miRNA:   3'- aguCCGCCGC-CGaCCAgaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 159000 0.66 0.935338
Target:  5'- -gAGGCGGCGGCcccgGcGUCcgcgccgggcggacCGACGACu -3'
miRNA:   3'- agUCCGCCGCCGa---C-CAGaa------------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 159885 0.67 0.889204
Target:  5'- gCAGGgGGUGGa-GGUgugUCGACGGCu -3'
miRNA:   3'- aGUCCgCCGCCgaCCAga-AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 165979 0.68 0.868494
Target:  5'- gCGGcGgGGCGGUcGGuUCUUCGuCAACu -3'
miRNA:   3'- aGUC-CgCCGCCGaCC-AGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 168751 0.67 0.895686
Target:  5'- gCAGGCGcuGCGGaagacCUGGUCguugccguaCGGCGACa -3'
miRNA:   3'- aGUCCGC--CGCC-----GACCAGaa-------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 169540 0.69 0.796198
Target:  5'- aCGGGUcccggcugcccGGCGGCgUGGcCUUCGcCGGCg -3'
miRNA:   3'- aGUCCG-----------CCGCCG-ACCaGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 169617 0.66 0.934858
Target:  5'- uUCAGGuCGGcCGGCaGGUCcaggugUCGggucuGCGGCa -3'
miRNA:   3'- -AGUCC-GCC-GCCGaCCAGa-----AGC-----UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.