miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 74401 0.69 0.787367
Target:  5'- -gAGaGCGGCGGCcaUGGccgucucuUCUUCGAcCGACg -3'
miRNA:   3'- agUC-CGCCGCCG--ACC--------AGAAGCU-GUUG- -5'
9335 5' -56.9 NC_002512.2 + 75284 0.71 0.7319
Target:  5'- --cGGCGGCGGC-GG-CggCGACGAUg -3'
miRNA:   3'- aguCCGCCGCCGaCCaGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 76109 0.69 0.813433
Target:  5'- -gAGGCGGgGGCgccggGGUggugUCGAUGACg -3'
miRNA:   3'- agUCCGCCgCCGa----CCAga--AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 77787 0.67 0.895686
Target:  5'- gUCGGGCGGaCGGUUc--CUUCGAguGCg -3'
miRNA:   3'- -AGUCCGCC-GCCGAccaGAAGCUguUG- -5'
9335 5' -56.9 NC_002512.2 + 90670 0.72 0.623865
Target:  5'- gUCGGcggccGCGGCGGCcagggccaGGUCcUCGACGGCg -3'
miRNA:   3'- -AGUC-----CGCCGCCGa-------CCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 91887 0.67 0.90195
Target:  5'- gCGGGCGGCGGCg---CggCGcACGGCc -3'
miRNA:   3'- aGUCCGCCGCCGaccaGaaGC-UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 92595 0.72 0.633808
Target:  5'- -gGGGCGGCGGUcccgaggccGGUCg-CGACGACg -3'
miRNA:   3'- agUCCGCCGCCGa--------CCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 92730 0.69 0.813433
Target:  5'- cCGGGgGGCGcGCUcGGUCcgauggcgcCGACGACg -3'
miRNA:   3'- aGUCCgCCGC-CGA-CCAGaa-------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 94092 0.69 0.821821
Target:  5'- --cGGCGGCGGCcGGUC--CGACu-- -3'
miRNA:   3'- aguCCGCCGCCGaCCAGaaGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 95639 0.66 0.913817
Target:  5'- cCAGGgGGCGGCUcGGcCgccccCGGCAc- -3'
miRNA:   3'- aGUCCgCCGCCGA-CCaGaa---GCUGUug -5'
9335 5' -56.9 NC_002512.2 + 96201 0.67 0.90195
Target:  5'- -gAGGCGGCcGCgaGGUCggccaCGGCGGCc -3'
miRNA:   3'- agUCCGCCGcCGa-CCAGaa---GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 101429 0.68 0.868494
Target:  5'- aCA-GCGGCGGCcGG-CggcgCGGCGACg -3'
miRNA:   3'- aGUcCGCCGCCGaCCaGaa--GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 103459 0.67 0.90195
Target:  5'- gCGGGUccgaggacGCGGCUcgGGUCU-CGGCGGCg -3'
miRNA:   3'- aGUCCGc-------CGCCGA--CCAGAaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 110047 0.74 0.54509
Target:  5'- cCAGGCGGCGGC-GGUgCgcaUCGccuGCAACa -3'
miRNA:   3'- aGUCCGCCGCCGaCCA-Ga--AGC---UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 114216 0.68 0.874902
Target:  5'- -gAGGCggaagauGGCGGUgaugUGGUCcucaUCGACGGCg -3'
miRNA:   3'- agUCCG-------CCGCCG----ACCAGa---AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 115265 0.67 0.88046
Target:  5'- aUAGGCGGCGGggagcgccuggccggGGUgaUCGugAGCa -3'
miRNA:   3'- aGUCCGCCGCCga-------------CCAgaAGCugUUG- -5'
9335 5' -56.9 NC_002512.2 + 124532 0.68 0.875604
Target:  5'- gCGGGCcagacgacGGC-GCUGGUCaUCGACAc- -3'
miRNA:   3'- aGUCCG--------CCGcCGACCAGaAGCUGUug -5'
9335 5' -56.9 NC_002512.2 + 124881 0.73 0.574373
Target:  5'- cCGGGCGGCGGCcccGUCa-CGGCGACc -3'
miRNA:   3'- aGUCCGCCGCCGac-CAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 127818 0.69 0.796198
Target:  5'- cUCGGGUcccGGCuccGGgaGGUCgUCGGCGGCg -3'
miRNA:   3'- -AGUCCG---CCG---CCgaCCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 128821 0.68 0.845981
Target:  5'- --cGGCGGCGGCgcuGUCggCG-CAGCu -3'
miRNA:   3'- aguCCGCCGCCGac-CAGaaGCuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.