miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 227622 0.78 0.322972
Target:  5'- gCGGGCGGCGGCggcgaGGUCa--GGCGACg -3'
miRNA:   3'- aGUCCGCCGCCGa----CCAGaagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 225586 0.66 0.939555
Target:  5'- -gAGG-GGCGcCgGGUCUUCGAcCAGCu -3'
miRNA:   3'- agUCCgCCGCcGaCCAGAAGCU-GUUG- -5'
9335 5' -56.9 NC_002512.2 + 225534 0.71 0.712668
Target:  5'- aCGGGaCGGCGGgaGcGcggaggacgacuUCUUCGGCGACg -3'
miRNA:   3'- aGUCC-GCCGCCgaC-C------------AGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 223574 0.67 0.898218
Target:  5'- gCGGGCGGCGGCcaccucgacgUguacagcagcaccguGGUCUUCGuCAu- -3'
miRNA:   3'- aGUCCGCCGCCG----------A---------------CCAGAAGCuGUug -5'
9335 5' -56.9 NC_002512.2 + 221402 0.76 0.416955
Target:  5'- gCGGGCggggaGGCGGCgGGUCUgucCGACGGCc -3'
miRNA:   3'- aGUCCG-----CCGCCGaCCAGAa--GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 217849 0.66 0.913817
Target:  5'- -gAGGCGGCaGC-GGUCUgccCGGCGu- -3'
miRNA:   3'- agUCCGCCGcCGaCCAGAa--GCUGUug -5'
9335 5' -56.9 NC_002512.2 + 217586 0.7 0.769317
Target:  5'- gUCcGGCGGCGccGCcucgggGGUCgUCGGCGACu -3'
miRNA:   3'- -AGuCCGCCGC--CGa-----CCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 214129 0.67 0.895686
Target:  5'- gUCAGGU-GCGGCcucaGcGcCUUCGACGGCa -3'
miRNA:   3'- -AGUCCGcCGCCGa---C-CaGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 209304 0.66 0.929936
Target:  5'- -aAGGagaaCGGCGGCgucagGGUCgaccUgGACGACg -3'
miRNA:   3'- agUCC----GCCGCCGa----CCAGa---AgCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 207607 0.72 0.64375
Target:  5'- --cGGCGGCGGCUGcug--CGGCGGCg -3'
miRNA:   3'- aguCCGCCGCCGACcagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 205717 0.69 0.796198
Target:  5'- aCAGGCGGCGGCacaaGUCggggUCGGgGGg -3'
miRNA:   3'- aGUCCGCCGCCGac--CAGa---AGCUgUUg -5'
9335 5' -56.9 NC_002512.2 + 205101 0.68 0.845201
Target:  5'- cUCGGGgGGCGcgcccggacccgaGCgGGUCUUCGucucCGACg -3'
miRNA:   3'- -AGUCCgCCGC-------------CGaCCAGAAGCu---GUUG- -5'
9335 5' -56.9 NC_002512.2 + 202525 0.7 0.750806
Target:  5'- -gAGGCGGCGGCgGGggcg-GACGACc -3'
miRNA:   3'- agUCCGCCGCCGaCCagaagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 201713 0.66 0.931932
Target:  5'- --cGGCGGCGGCgucGUCgucgcggggggaGACGACg -3'
miRNA:   3'- aguCCGCCGCCGac-CAGaag---------CUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 201355 0.77 0.400164
Target:  5'- aUCGGGCGGCGGC-GGacc-CGACAGCu -3'
miRNA:   3'- -AGUCCGCCGCCGaCCagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 201056 0.66 0.923732
Target:  5'- gCAGGCGGaucgaccgGGCccacaugugcggGGUCUggGACAGCa -3'
miRNA:   3'- aGUCCGCCg-------CCGa-----------CCAGAagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 197847 0.69 0.830047
Target:  5'- -gGGGCGGCGGgaGGcccUCUUcaacCGACuGCg -3'
miRNA:   3'- agUCCGCCGCCgaCC---AGAA----GCUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 196422 0.69 0.787367
Target:  5'- -gGGGCGGCGGCcgGGUCgggagaggUCGGgGc- -3'
miRNA:   3'- agUCCGCCGCCGa-CCAGa-------AGCUgUug -5'
9335 5' -56.9 NC_002512.2 + 195003 0.67 0.889204
Target:  5'- -aGGGCGaCGGC-GGUCccggCGGCGGCg -3'
miRNA:   3'- agUCCGCcGCCGaCCAGaa--GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 190206 0.67 0.895686
Target:  5'- -aAGGuCGGCGGCgcGGUCgUCcggGACGGCc -3'
miRNA:   3'- agUCC-GCCGCCGa-CCAGaAG---CUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.