miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 156473 0.66 0.939555
Target:  5'- cUCGGG-GGCGGCgGG-CU-CGGCGGg -3'
miRNA:   3'- -AGUCCgCCGCCGaCCaGAaGCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 95639 0.66 0.913817
Target:  5'- cCAGGgGGCGGCUcGGcCgccccCGGCAc- -3'
miRNA:   3'- aGUCCgCCGCCGA-CCaGaa---GCUGUug -5'
9335 5' -56.9 NC_002512.2 + 149494 0.66 0.913817
Target:  5'- aUCGGG-GGCGGgUGGUCaaaaGGCcGCg -3'
miRNA:   3'- -AGUCCgCCGCCgACCAGaag-CUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 217849 0.66 0.913817
Target:  5'- -gAGGCGGCaGC-GGUCUgccCGGCGu- -3'
miRNA:   3'- agUCCGCCGcCGaCCAGAa--GCUGUug -5'
9335 5' -56.9 NC_002512.2 + 153404 0.66 0.919416
Target:  5'- -gAGcGCGGCGGC-GGUCgaggUGGCGGa -3'
miRNA:   3'- agUC-CGCCGCCGaCCAGaa--GCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 201056 0.66 0.923732
Target:  5'- gCAGGCGGaucgaccgGGCccacaugugcggGGUCUggGACAGCa -3'
miRNA:   3'- aGUCCGCCg-------CCGa-----------CCAGAagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 158966 0.66 0.924789
Target:  5'- --cGGCGGCGaGC-GGU--UCGGCGGCc -3'
miRNA:   3'- aguCCGCCGC-CGaCCAgaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 134173 0.66 0.929936
Target:  5'- cCGGacccUGGCGGCgu-UCUUCGGCGACg -3'
miRNA:   3'- aGUCc---GCCGCCGaccAGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 209304 0.66 0.929936
Target:  5'- -aAGGagaaCGGCGGCgucagGGUCgaccUgGACGACg -3'
miRNA:   3'- agUCC----GCCGCCGa----CCAGa---AgCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 201713 0.66 0.931932
Target:  5'- --cGGCGGCGGCgucGUCgucgcggggggaGACGACg -3'
miRNA:   3'- aguCCGCCGCCGac-CAGaag---------CUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 185385 0.66 0.934376
Target:  5'- --cGGCGGCGGCUGcgaggccGUCUUCuccgccCGGCc -3'
miRNA:   3'- aguCCGCCGCCGAC-------CAGAAGcu----GUUG- -5'
9335 5' -56.9 NC_002512.2 + 169617 0.66 0.934858
Target:  5'- uUCAGGuCGGcCGGCaGGUCcaggugUCGggucuGCGGCa -3'
miRNA:   3'- -AGUCC-GCC-GCCGaCCAGa-----AGC-----UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 159000 0.66 0.935338
Target:  5'- -gAGGCGGCGGCcccgGcGUCcgcgccgggcggacCGACGACu -3'
miRNA:   3'- agUCCGCCGCCGa---C-CAGaa------------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 184901 0.66 0.937703
Target:  5'- gCGGGCGGCGGCgcuacugcccCUUCGcCGAg -3'
miRNA:   3'- aGUCCGCCGCCGacca------GAAGCuGUUg -5'
9335 5' -56.9 NC_002512.2 + 225586 0.66 0.939555
Target:  5'- -gAGG-GGCGcCgGGUCUUCGAcCAGCu -3'
miRNA:   3'- agUCCgCCGCcGaCCAGAAGCU-GUUG- -5'
9335 5' -56.9 NC_002512.2 + 188658 0.67 0.907995
Target:  5'- --cGGCGGCGGCccGUCgucCGACcGCg -3'
miRNA:   3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 179517 0.67 0.907995
Target:  5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3'
miRNA:   3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 96201 0.67 0.90195
Target:  5'- -gAGGCGGCcGCgaGGUCggccaCGGCGGCc -3'
miRNA:   3'- agUCCGCCGcCGa-CCAGaa---GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 91887 0.67 0.90195
Target:  5'- gCGGGCGGCGGCg---CggCGcACGGCc -3'
miRNA:   3'- aGUCCGCCGCCGaccaGaaGC-UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 103459 0.67 0.90195
Target:  5'- gCGGGUccgaggacGCGGCUcgGGUCU-CGGCGGCg -3'
miRNA:   3'- aGUCCGc-------CGCCGA--CCAGAaGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.