miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 115265 0.67 0.88046
Target:  5'- aUAGGCGGCGGggagcgccuggccggGGUgaUCGugAGCa -3'
miRNA:   3'- aGUCCGCCGCCga-------------CCAgaAGCugUUG- -5'
9335 5' -56.9 NC_002512.2 + 77787 0.67 0.895686
Target:  5'- gUCGGGCGGaCGGUUc--CUUCGAguGCg -3'
miRNA:   3'- -AGUCCGCC-GCCGAccaGAAGCUguUG- -5'
9335 5' -56.9 NC_002512.2 + 190206 0.67 0.895686
Target:  5'- -aAGGuCGGCGGCgcGGUCgUCcggGACGGCc -3'
miRNA:   3'- agUCC-GCCGCCGa-CCAGaAG---CUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 214129 0.67 0.895686
Target:  5'- gUCAGGU-GCGGCcucaGcGcCUUCGACGGCa -3'
miRNA:   3'- -AGUCCGcCGCCGa---C-CaGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 188658 0.67 0.907995
Target:  5'- --cGGCGGCGGCccGUCgucCGACcGCg -3'
miRNA:   3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 179517 0.67 0.907995
Target:  5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3'
miRNA:   3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 96201 0.67 0.90195
Target:  5'- -gAGGCGGCcGCgaGGUCggccaCGGCGGCc -3'
miRNA:   3'- agUCCGCCGcCGa-CCAGaa---GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 91887 0.67 0.90195
Target:  5'- gCGGGCGGCGGCg---CggCGcACGGCc -3'
miRNA:   3'- aGUCCGCCGCCGaccaGaaGC-UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 103459 0.67 0.90195
Target:  5'- gCGGGUccgaggacGCGGCUcgGGUCU-CGGCGGCg -3'
miRNA:   3'- aGUCCGc-------CGCCGA--CCAGAaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 223574 0.67 0.898218
Target:  5'- gCGGGCGGCGGCcaccucgacgUguacagcagcaccguGGUCUUCGuCAu- -3'
miRNA:   3'- aGUCCGCCGCCG----------A---------------CCAGAAGCuGUug -5'
9335 5' -56.9 NC_002512.2 + 205101 0.68 0.845201
Target:  5'- cUCGGGgGGCGcgcccggacccgaGCgGGUCUUCGucucCGACg -3'
miRNA:   3'- -AGUCCgCCGC-------------CGaCCAGAAGCu---GUUG- -5'
9335 5' -56.9 NC_002512.2 + 179460 0.68 0.845201
Target:  5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3'
miRNA:   3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 178804 0.68 0.845981
Target:  5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3'
miRNA:   3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 128821 0.68 0.845981
Target:  5'- --cGGCGGCGGCgcuGUCggCG-CAGCu -3'
miRNA:   3'- aguCCGCCGCCGac-CAGaaGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 146725 0.68 0.853677
Target:  5'- -gGGGCGGCGGCcgcGGcCgccgggccCGACGACc -3'
miRNA:   3'- agUCCGCCGCCGa--CCaGaa------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 101429 0.68 0.868494
Target:  5'- aCA-GCGGCGGCcGG-CggcgCGGCGACg -3'
miRNA:   3'- aGUcCGCCGCCGaCCaGaa--GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 165979 0.68 0.868494
Target:  5'- gCGGcGgGGCGGUcGGuUCUUCGuCAACu -3'
miRNA:   3'- aGUC-CgCCGCCGaCC-AGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 114216 0.68 0.874902
Target:  5'- -gAGGCggaagauGGCGGUgaugUGGUCcucaUCGACGGCg -3'
miRNA:   3'- agUCCG-------CCGCCG----ACCAGa---AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 124532 0.68 0.875604
Target:  5'- gCGGGCcagacgacGGC-GCUGGUCaUCGACAc- -3'
miRNA:   3'- aGUCCG--------CCGcCGACCAGaAGCUGUug -5'
9335 5' -56.9 NC_002512.2 + 189058 0.69 0.830047
Target:  5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3'
miRNA:   3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.