miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 173633 0.7 0.778404
Target:  5'- ---cGCGGCGGCgaaccccgGGUCgggggCGGCGGCa -3'
miRNA:   3'- agucCGCCGCCGa-------CCAGaa---GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 74401 0.69 0.787367
Target:  5'- -gAGaGCGGCGGCcaUGGccgucucuUCUUCGAcCGACg -3'
miRNA:   3'- agUC-CGCCGCCG--ACC--------AGAAGCU-GUUG- -5'
9335 5' -56.9 NC_002512.2 + 196422 0.69 0.787367
Target:  5'- -gGGGCGGCGGCcgGGUCgggagaggUCGGgGc- -3'
miRNA:   3'- agUCCGCCGCCGa-CCAGa-------AGCUgUug -5'
9335 5' -56.9 NC_002512.2 + 127818 0.69 0.796198
Target:  5'- cUCGGGUcccGGCuccGGgaGGUCgUCGGCGGCg -3'
miRNA:   3'- -AGUCCG---CCG---CCgaCCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 205717 0.69 0.796198
Target:  5'- aCAGGCGGCGGCacaaGUCggggUCGGgGGg -3'
miRNA:   3'- aGUCCGCCGCCGac--CAGa---AGCUgUUg -5'
9335 5' -56.9 NC_002512.2 + 169540 0.69 0.796198
Target:  5'- aCGGGUcccggcugcccGGCGGCgUGGcCUUCGcCGGCg -3'
miRNA:   3'- aGUCCG-----------CCGCCG-ACCaGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 133079 0.69 0.804889
Target:  5'- gCAGGCGGUGGgUccGGUUggCGcGCAGCg -3'
miRNA:   3'- aGUCCGCCGCCgA--CCAGaaGC-UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 146116 0.69 0.804889
Target:  5'- --cGGCGGCGGCgccGUCUUCuGCAc- -3'
miRNA:   3'- aguCCGCCGCCGac-CAGAAGcUGUug -5'
9335 5' -56.9 NC_002512.2 + 76109 0.69 0.813433
Target:  5'- -gAGGCGGgGGCgccggGGUggugUCGAUGACg -3'
miRNA:   3'- agUCCGCCgCCGa----CCAga--AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 92730 0.69 0.813433
Target:  5'- cCGGGgGGCGcGCUcGGUCcgauggcgcCGACGACg -3'
miRNA:   3'- aGUCCgCCGC-CGA-CCAGaa-------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 94092 0.69 0.821821
Target:  5'- --cGGCGGCGGCcGGUC--CGACu-- -3'
miRNA:   3'- aguCCGCCGCCGaCCAGaaGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 197847 0.69 0.830047
Target:  5'- -gGGGCGGCGGgaGGcccUCUUcaacCGACuGCg -3'
miRNA:   3'- agUCCGCCGCCgaCC---AGAA----GCUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 189058 0.69 0.830047
Target:  5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3'
miRNA:   3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 156516 0.69 0.830047
Target:  5'- -uGGGCGGCggGGCgcgggGGUC--CGGCGGCg -3'
miRNA:   3'- agUCCGCCG--CCGa----CCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 157799 0.69 0.830047
Target:  5'- cCGGGCGGUGuGCaGGUCgcugCGGgGGCc -3'
miRNA:   3'- aGUCCGCCGC-CGaCCAGaa--GCUgUUG- -5'
9335 5' -56.9 NC_002512.2 + 179460 0.68 0.845201
Target:  5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3'
miRNA:   3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 205101 0.68 0.845201
Target:  5'- cUCGGGgGGCGcgcccggacccgaGCgGGUCUUCGucucCGACg -3'
miRNA:   3'- -AGUCCgCCGC-------------CGaCCAGAAGCu---GUUG- -5'
9335 5' -56.9 NC_002512.2 + 128821 0.68 0.845981
Target:  5'- --cGGCGGCGGCgcuGUCggCG-CAGCu -3'
miRNA:   3'- aguCCGCCGCCGac-CAGaaGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 178804 0.68 0.845981
Target:  5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3'
miRNA:   3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 146725 0.68 0.853677
Target:  5'- -gGGGCGGCGGCcgcGGcCgccgggccCGACGACc -3'
miRNA:   3'- agUCCGCCGCCGa--CCaGaa------GCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.