Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9335 | 5' | -56.9 | NC_002512.2 | + | 223574 | 0.67 | 0.898218 |
Target: 5'- gCGGGCGGCGGCcaccucgacgUguacagcagcaccguGGUCUUCGuCAu- -3' miRNA: 3'- aGUCCGCCGCCG----------A---------------CCAGAAGCuGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 190206 | 0.67 | 0.895686 |
Target: 5'- -aAGGuCGGCGGCgcGGUCgUCcggGACGGCc -3' miRNA: 3'- agUCC-GCCGCCGa-CCAGaAG---CUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 77787 | 0.67 | 0.895686 |
Target: 5'- gUCGGGCGGaCGGUUc--CUUCGAguGCg -3' miRNA: 3'- -AGUCCGCC-GCCGAccaGAAGCUguUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 168751 | 0.67 | 0.895686 |
Target: 5'- gCAGGCGcuGCGGaagacCUGGUCguugccguaCGGCGACa -3' miRNA: 3'- aGUCCGC--CGCC-----GACCAGaa-------GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 214129 | 0.67 | 0.895686 |
Target: 5'- gUCAGGU-GCGGCcucaGcGcCUUCGACGGCa -3' miRNA: 3'- -AGUCCGcCGCCGa---C-CaGAAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 195003 | 0.67 | 0.889204 |
Target: 5'- -aGGGCGaCGGC-GGUCccggCGGCGGCg -3' miRNA: 3'- agUCCGCcGCCGaCCAGaa--GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184758 | 0.67 | 0.889204 |
Target: 5'- --cGGCgGGCGGCccgUGGUCgUCGACc-- -3' miRNA: 3'- aguCCG-CCGCCG---ACCAGaAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 159885 | 0.67 | 0.889204 |
Target: 5'- gCAGGgGGUGGa-GGUgugUCGACGGCu -3' miRNA: 3'- aGUCCgCCGCCgaCCAga-AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 152682 | 0.67 | 0.887218 |
Target: 5'- -gGGGcCGGCGGCcGGUCUcgucgcguccccggUCGggguGCGGCg -3' miRNA: 3'- agUCC-GCCGCCGaCCAGA--------------AGC----UGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 115265 | 0.67 | 0.88046 |
Target: 5'- aUAGGCGGCGGggagcgccuggccggGGUgaUCGugAGCa -3' miRNA: 3'- aGUCCGCCGCCga-------------CCAgaAGCugUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 124532 | 0.68 | 0.875604 |
Target: 5'- gCGGGCcagacgacGGC-GCUGGUCaUCGACAc- -3' miRNA: 3'- aGUCCG--------CCGcCGACCAGaAGCUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 114216 | 0.68 | 0.874902 |
Target: 5'- -gAGGCggaagauGGCGGUgaugUGGUCcucaUCGACGGCg -3' miRNA: 3'- agUCCG-------CCGCCG----ACCAGa---AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 165979 | 0.68 | 0.868494 |
Target: 5'- gCGGcGgGGCGGUcGGuUCUUCGuCAACu -3' miRNA: 3'- aGUC-CgCCGCCGaCC-AGAAGCuGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 101429 | 0.68 | 0.868494 |
Target: 5'- aCA-GCGGCGGCcGG-CggcgCGGCGACg -3' miRNA: 3'- aGUcCGCCGCCGaCCaGaa--GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 146725 | 0.68 | 0.853677 |
Target: 5'- -gGGGCGGCGGCcgcGGcCgccgggccCGACGACc -3' miRNA: 3'- agUCCGCCGCCGa--CCaGaa------GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 128821 | 0.68 | 0.845981 |
Target: 5'- --cGGCGGCGGCgcuGUCggCG-CAGCu -3' miRNA: 3'- aguCCGCCGCCGac-CAGaaGCuGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 178804 | 0.68 | 0.845981 |
Target: 5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3' miRNA: 3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179460 | 0.68 | 0.845201 |
Target: 5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3' miRNA: 3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 205101 | 0.68 | 0.845201 |
Target: 5'- cUCGGGgGGCGcgcccggacccgaGCgGGUCUUCGucucCGACg -3' miRNA: 3'- -AGUCCgCCGC-------------CGaCCAGAAGCu---GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 197847 | 0.69 | 0.830047 |
Target: 5'- -gGGGCGGCGGgaGGcccUCUUcaacCGACuGCg -3' miRNA: 3'- agUCCGCCGCCgaCC---AGAA----GCUGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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