miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 151040 0.79 0.282259
Target:  5'- -gAGGCGGCGGCccgucacgcGGUCcUCGACGGCg -3'
miRNA:   3'- agUCCGCCGCCGa--------CCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 227622 0.78 0.322972
Target:  5'- gCGGGCGGCGGCggcgaGGUCa--GGCGACg -3'
miRNA:   3'- aGUCCGCCGCCGa----CCAGaagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 189915 0.78 0.337483
Target:  5'- -gAGGaCGGCGGCUccGGUCU-CGGCGGCg -3'
miRNA:   3'- agUCC-GCCGCCGA--CCAGAaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 201355 0.77 0.400164
Target:  5'- aUCGGGCGGCGGC-GGacc-CGACAGCu -3'
miRNA:   3'- -AGUCCGCCGCCGaCCagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 221402 0.76 0.416955
Target:  5'- gCGGGCggggaGGCGGCgGGUCUgucCGACGGCc -3'
miRNA:   3'- aGUCCG-----CCGCCGaCCAGAa--GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 188778 0.74 0.54509
Target:  5'- uUCcGGCGGCGGCUccGGcC-UCGGCGGCc -3'
miRNA:   3'- -AGuCCGCCGCCGA--CCaGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 110047 0.74 0.54509
Target:  5'- cCAGGCGGCGGC-GGUgCgcaUCGccuGCAACa -3'
miRNA:   3'- aGUCCGCCGCCGaCCA-Ga--AGC---UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 187653 0.74 0.554803
Target:  5'- -aGGGCGGCGGCcacGGUCacggucaCGGCGGCg -3'
miRNA:   3'- agUCCGCCGCCGa--CCAGaa-----GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 153373 0.74 0.554803
Target:  5'- -uGGGCGGCGGCUGG-CggucCGgaGCGACg -3'
miRNA:   3'- agUCCGCCGCCGACCaGaa--GC--UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 124881 0.73 0.574373
Target:  5'- cCGGGCGGCGGCcccGUCa-CGGCGACc -3'
miRNA:   3'- aGUCCGCCGCCGac-CAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 90670 0.72 0.623865
Target:  5'- gUCGGcggccGCGGCGGCcagggccaGGUCcUCGACGGCg -3'
miRNA:   3'- -AGUC-----CGCCGCCGa-------CCAGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 92595 0.72 0.633808
Target:  5'- -gGGGCGGCGGUcccgaggccGGUCg-CGACGACg -3'
miRNA:   3'- agUCCGCCGCCGa--------CCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 207607 0.72 0.64375
Target:  5'- --cGGCGGCGGCUGcug--CGGCGGCg -3'
miRNA:   3'- aguCCGCCGCCGACcagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 181592 0.72 0.663601
Target:  5'- gCAGG-GGCGGCgGGUCcgCGACGu- -3'
miRNA:   3'- aGUCCgCCGCCGaCCAGaaGCUGUug -5'
9335 5' -56.9 NC_002512.2 + 180279 0.71 0.693178
Target:  5'- cUCAuGGCGGCGGCguucccGUCgcccUCGACAGg -3'
miRNA:   3'- -AGU-CCGCCGCCGac----CAGa---AGCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 225534 0.71 0.712668
Target:  5'- aCGGGaCGGCGGgaGcGcggaggacgacuUCUUCGGCGACg -3'
miRNA:   3'- aGUCC-GCCGCCgaC-C------------AGAAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 75284 0.71 0.7319
Target:  5'- --cGGCGGCGGC-GG-CggCGACGAUg -3'
miRNA:   3'- aguCCGCCGCCGaCCaGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 202525 0.7 0.750806
Target:  5'- -gAGGCGGCGGCgGGggcg-GACGACc -3'
miRNA:   3'- agUCCGCCGCCGaCCagaagCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 157163 0.7 0.750806
Target:  5'- gCGGGCcgGGCGGCgUGGg---CGGCGGCg -3'
miRNA:   3'- aGUCCG--CCGCCG-ACCagaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 217586 0.7 0.769317
Target:  5'- gUCcGGCGGCGccGCcucgggGGUCgUCGGCGACu -3'
miRNA:   3'- -AGuCCGCCGC--CGa-----CCAGaAGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.