miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9335 5' -56.9 NC_002512.2 + 189915 0.78 0.337483
Target:  5'- -gAGGaCGGCGGCUccGGUCU-CGGCGGCg -3'
miRNA:   3'- agUCC-GCCGCCGA--CCAGAaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 189058 0.69 0.830047
Target:  5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3'
miRNA:   3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 188778 0.74 0.54509
Target:  5'- uUCcGGCGGCGGCUccGGcC-UCGGCGGCc -3'
miRNA:   3'- -AGuCCGCCGCCGA--CCaGaAGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 188658 0.67 0.907995
Target:  5'- --cGGCGGCGGCccGUCgucCGACcGCg -3'
miRNA:   3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5'
9335 5' -56.9 NC_002512.2 + 187653 0.74 0.554803
Target:  5'- -aGGGCGGCGGCcacGGUCacggucaCGGCGGCg -3'
miRNA:   3'- agUCCGCCGCCGa--CCAGaa-----GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 185385 0.66 0.934376
Target:  5'- --cGGCGGCGGCUGcgaggccGUCUUCuccgccCGGCc -3'
miRNA:   3'- aguCCGCCGCCGAC-------CAGAAGcu----GUUG- -5'
9335 5' -56.9 NC_002512.2 + 184901 0.66 0.937703
Target:  5'- gCGGGCGGCGGCgcuacugcccCUUCGcCGAg -3'
miRNA:   3'- aGUCCGCCGCCGacca------GAAGCuGUUg -5'
9335 5' -56.9 NC_002512.2 + 184758 0.67 0.889204
Target:  5'- --cGGCgGGCGGCccgUGGUCgUCGACc-- -3'
miRNA:   3'- aguCCG-CCGCCG---ACCAGaAGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 181592 0.72 0.663601
Target:  5'- gCAGG-GGCGGCgGGUCcgCGACGu- -3'
miRNA:   3'- aGUCCgCCGCCGaCCAGaaGCUGUug -5'
9335 5' -56.9 NC_002512.2 + 180279 0.71 0.693178
Target:  5'- cUCAuGGCGGCGGCguucccGUCgcccUCGACAGg -3'
miRNA:   3'- -AGU-CCGCCGCCGac----CAGa---AGCUGUUg -5'
9335 5' -56.9 NC_002512.2 + 179517 0.67 0.907995
Target:  5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3'
miRNA:   3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5'
9335 5' -56.9 NC_002512.2 + 179460 0.68 0.845201
Target:  5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3'
miRNA:   3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 178804 0.68 0.845981
Target:  5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3'
miRNA:   3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 173633 0.7 0.778404
Target:  5'- ---cGCGGCGGCgaaccccgGGUCgggggCGGCGGCa -3'
miRNA:   3'- agucCGCCGCCGa-------CCAGaa---GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 169617 0.66 0.934858
Target:  5'- uUCAGGuCGGcCGGCaGGUCcaggugUCGggucuGCGGCa -3'
miRNA:   3'- -AGUCC-GCC-GCCGaCCAGa-----AGC-----UGUUG- -5'
9335 5' -56.9 NC_002512.2 + 169540 0.69 0.796198
Target:  5'- aCGGGUcccggcugcccGGCGGCgUGGcCUUCGcCGGCg -3'
miRNA:   3'- aGUCCG-----------CCGCCG-ACCaGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 168751 0.67 0.895686
Target:  5'- gCAGGCGcuGCGGaagacCUGGUCguugccguaCGGCGACa -3'
miRNA:   3'- aGUCCGC--CGCC-----GACCAGaa-------GCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 165979 0.68 0.868494
Target:  5'- gCGGcGgGGCGGUcGGuUCUUCGuCAACu -3'
miRNA:   3'- aGUC-CgCCGCCGaCC-AGAAGCuGUUG- -5'
9335 5' -56.9 NC_002512.2 + 159885 0.67 0.889204
Target:  5'- gCAGGgGGUGGa-GGUgugUCGACGGCu -3'
miRNA:   3'- aGUCCgCCGCCgaCCAga-AGCUGUUG- -5'
9335 5' -56.9 NC_002512.2 + 159000 0.66 0.935338
Target:  5'- -gAGGCGGCGGCcccgGcGUCcgcgccgggcggacCGACGACu -3'
miRNA:   3'- agUCCGCCGCCGa---C-CAGaa------------GCUGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.