Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9335 | 5' | -56.9 | NC_002512.2 | + | 189915 | 0.78 | 0.337483 |
Target: 5'- -gAGGaCGGCGGCUccGGUCU-CGGCGGCg -3' miRNA: 3'- agUCC-GCCGCCGA--CCAGAaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 189058 | 0.69 | 0.830047 |
Target: 5'- cUCGGaGCGGcCGGC-GGcgCUcUCGACGGCg -3' miRNA: 3'- -AGUC-CGCC-GCCGaCCa-GA-AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 188778 | 0.74 | 0.54509 |
Target: 5'- uUCcGGCGGCGGCUccGGcC-UCGGCGGCc -3' miRNA: 3'- -AGuCCGCCGCCGA--CCaGaAGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 188658 | 0.67 | 0.907995 |
Target: 5'- --cGGCGGCGGCccGUCgucCGACcGCg -3' miRNA: 3'- aguCCGCCGCCGacCAGaa-GCUGuUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 187653 | 0.74 | 0.554803 |
Target: 5'- -aGGGCGGCGGCcacGGUCacggucaCGGCGGCg -3' miRNA: 3'- agUCCGCCGCCGa--CCAGaa-----GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 185385 | 0.66 | 0.934376 |
Target: 5'- --cGGCGGCGGCUGcgaggccGUCUUCuccgccCGGCc -3' miRNA: 3'- aguCCGCCGCCGAC-------CAGAAGcu----GUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184901 | 0.66 | 0.937703 |
Target: 5'- gCGGGCGGCGGCgcuacugcccCUUCGcCGAg -3' miRNA: 3'- aGUCCGCCGCCGacca------GAAGCuGUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 184758 | 0.67 | 0.889204 |
Target: 5'- --cGGCgGGCGGCccgUGGUCgUCGACc-- -3' miRNA: 3'- aguCCG-CCGCCG---ACCAGaAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 181592 | 0.72 | 0.663601 |
Target: 5'- gCAGG-GGCGGCgGGUCcgCGACGu- -3' miRNA: 3'- aGUCCgCCGCCGaCCAGaaGCUGUug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 180279 | 0.71 | 0.693178 |
Target: 5'- cUCAuGGCGGCGGCguucccGUCgcccUCGACAGg -3' miRNA: 3'- -AGU-CCGCCGCCGac----CAGa---AGCUGUUg -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179517 | 0.67 | 0.907995 |
Target: 5'- cUCAGuCGGCucuucggucgucGGCUcGGUCUUCGGCu-- -3' miRNA: 3'- -AGUCcGCCG------------CCGA-CCAGAAGCUGuug -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 179460 | 0.68 | 0.845201 |
Target: 5'- aUCcGGCGcCGGCcucuuccUGGUCUgcuUCGGCGGCg -3' miRNA: 3'- -AGuCCGCcGCCG-------ACCAGA---AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 178804 | 0.68 | 0.845981 |
Target: 5'- cUCuuGGCGGCcaGUUGGUC--CGACAGCg -3' miRNA: 3'- -AGu-CCGCCGc-CGACCAGaaGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 173633 | 0.7 | 0.778404 |
Target: 5'- ---cGCGGCGGCgaaccccgGGUCgggggCGGCGGCa -3' miRNA: 3'- agucCGCCGCCGa-------CCAGaa---GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 169617 | 0.66 | 0.934858 |
Target: 5'- uUCAGGuCGGcCGGCaGGUCcaggugUCGggucuGCGGCa -3' miRNA: 3'- -AGUCC-GCC-GCCGaCCAGa-----AGC-----UGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 169540 | 0.69 | 0.796198 |
Target: 5'- aCGGGUcccggcugcccGGCGGCgUGGcCUUCGcCGGCg -3' miRNA: 3'- aGUCCG-----------CCGCCG-ACCaGAAGCuGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 168751 | 0.67 | 0.895686 |
Target: 5'- gCAGGCGcuGCGGaagacCUGGUCguugccguaCGGCGACa -3' miRNA: 3'- aGUCCGC--CGCC-----GACCAGaa-------GCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 165979 | 0.68 | 0.868494 |
Target: 5'- gCGGcGgGGCGGUcGGuUCUUCGuCAACu -3' miRNA: 3'- aGUC-CgCCGCCGaCC-AGAAGCuGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 159885 | 0.67 | 0.889204 |
Target: 5'- gCAGGgGGUGGa-GGUgugUCGACGGCu -3' miRNA: 3'- aGUCCgCCGCCgaCCAga-AGCUGUUG- -5' |
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9335 | 5' | -56.9 | NC_002512.2 | + | 159000 | 0.66 | 0.935338 |
Target: 5'- -gAGGCGGCGGCcccgGcGUCcgcgccgggcggacCGACGACu -3' miRNA: 3'- agUCCGCCGCCGa---C-CAGaa------------GCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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