miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 3' -48.9 NC_002512.2 + 196755 0.83 0.553802
Target:  5'- cGAcCGGCGGCGUGUACUGCuACGaCCu -3'
miRNA:   3'- -CUuGCUGUCGCACAUGACGuUGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 219328 0.8 0.689108
Target:  5'- aGAGCGuCGGCGUGgcccgccgGCUGCccGGCGUCCg -3'
miRNA:   3'- -CUUGCuGUCGCACa-------UGACG--UUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 170101 0.8 0.709671
Target:  5'- ---gGGCAGCuUGUACUGCAGCcgCCg -3'
miRNA:   3'- cuugCUGUCGcACAUGACGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 195789 0.79 0.769393
Target:  5'- uGGACGugGGCGUGUugcuccGCUGCGgggACAUCg -3'
miRNA:   3'- -CUUGCugUCGCACA------UGACGU---UGUAGg -5'
9337 3' -48.9 NC_002512.2 + 110049 0.76 0.865522
Target:  5'- aGGCGGCGGCG-GUGCgcaucgccUGCAACAUCa -3'
miRNA:   3'- cUUGCUGUCGCaCAUG--------ACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 223575 0.75 0.907447
Target:  5'- cGGGCGGCGGCcaccucgacGUGUACaGCAGCA-CCg -3'
miRNA:   3'- -CUUGCUGUCG---------CACAUGaCGUUGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 207604 0.75 0.907447
Target:  5'- cGACGGCGGCGgcUGCUGCGGCGgcgaguUCCu -3'
miRNA:   3'- cUUGCUGUCGCacAUGACGUUGU------AGG- -5'
9337 3' -48.9 NC_002512.2 + 212578 0.75 0.925138
Target:  5'- cGACGACGGCGgcgACgacGCGAUGUCCg -3'
miRNA:   3'- cUUGCUGUCGCacaUGa--CGUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 190228 0.71 0.981173
Target:  5'- gGGACGGCcaCGUcUGCUGCGACGUCa -3'
miRNA:   3'- -CUUGCUGucGCAcAUGACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 185582 0.71 0.981173
Target:  5'- gGAACGGCAGCaUGcagaacguCUGCGACcUCCu -3'
miRNA:   3'- -CUUGCUGUCGcACau------GACGUUGuAGG- -5'
9337 3' -48.9 NC_002512.2 + 189904 0.71 0.983213
Target:  5'- aGGACGGCGGCGaggACgGCGGC-UCCg -3'
miRNA:   3'- -CUUGCUGUCGCacaUGaCGUUGuAGG- -5'
9337 3' -48.9 NC_002512.2 + 206439 0.71 0.983213
Target:  5'- uAGCGACGGCGcgGUgaaguagucGCUGCGcacggccaGCGUCCc -3'
miRNA:   3'- cUUGCUGUCGCa-CA---------UGACGU--------UGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 182258 0.71 0.985082
Target:  5'- cAGCGACGGCGccaggacgGggaACUGC-ACGUCCg -3'
miRNA:   3'- cUUGCUGUCGCa-------Ca--UGACGuUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 115368 0.71 0.988339
Target:  5'- aGACGcCGGCGUcGUACgGCAAguuCGUCCu -3'
miRNA:   3'- cUUGCuGUCGCA-CAUGaCGUU---GUAGG- -5'
9337 3' -48.9 NC_002512.2 + 189080 0.71 0.988339
Target:  5'- --uCGACGGCGaGU-CUccGCGACGUCCg -3'
miRNA:   3'- cuuGCUGUCGCaCAuGA--CGUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 102535 0.7 0.989611
Target:  5'- aGGGCGACGGCGgGUcaGCUcucguccGCGGCGUCg -3'
miRNA:   3'- -CUUGCUGUCGCaCA--UGA-------CGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 33985 0.7 0.989745
Target:  5'- -cGCGACgggugaGGCGUGgagACUGgcagaCAGCGUCCg -3'
miRNA:   3'- cuUGCUG------UCGCACa--UGAC-----GUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 142979 0.7 0.991015
Target:  5'- cGAACGACAGgGUcucGUugUGCGGaaaGUCg -3'
miRNA:   3'- -CUUGCUGUCgCA---CAugACGUUg--UAGg -5'
9337 3' -48.9 NC_002512.2 + 7391 0.7 0.992158
Target:  5'- cGGACGACGaucGCGUcgACUGCAAUggcaacacggaGUCCa -3'
miRNA:   3'- -CUUGCUGU---CGCAcaUGACGUUG-----------UAGG- -5'
9337 3' -48.9 NC_002512.2 + 75281 0.7 0.992158
Target:  5'- cGACGGCGGCGgcgGCgGCGACGaugCCg -3'
miRNA:   3'- cUUGCUGUCGCacaUGaCGUUGUa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.