miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9337 3' -48.9 NC_002512.2 + 7391 0.7 0.992158
Target:  5'- cGGACGACGaucGCGUcgACUGCAAUggcaacacggaGUCCa -3'
miRNA:   3'- -CUUGCUGU---CGCAcaUGACGUUG-----------UAGG- -5'
9337 3' -48.9 NC_002512.2 + 26549 0.66 0.999885
Target:  5'- uGAACGugAGUGU--ACUGUAGCGa-- -3'
miRNA:   3'- -CUUGCugUCGCAcaUGACGUUGUagg -5'
9337 3' -48.9 NC_002512.2 + 33985 0.7 0.989745
Target:  5'- -cGCGACgggugaGGCGUGgagACUGgcagaCAGCGUCCg -3'
miRNA:   3'- cuUGCUG------UCGCACa--UGAC-----GUUGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 75281 0.7 0.992158
Target:  5'- cGACGGCGGCGgcgGCgGCGACGaugCCg -3'
miRNA:   3'- cUUGCUGUCGCacaUGaCGUUGUa--GG- -5'
9337 3' -48.9 NC_002512.2 + 88689 0.69 0.99491
Target:  5'- --cCGGCuGCGc-UGCUGCAugAUCCg -3'
miRNA:   3'- cuuGCUGuCGCacAUGACGUugUAGG- -5'
9337 3' -48.9 NC_002512.2 + 90939 0.66 0.999885
Target:  5'- -cGCGACcggGGCGUGcguggGC-GCGACgAUCCa -3'
miRNA:   3'- cuUGCUG---UCGCACa----UGaCGUUG-UAGG- -5'
9337 3' -48.9 NC_002512.2 + 93969 0.67 0.999521
Target:  5'- --cCGACucaGGaCGUGUcGCUGCG-CGUCCg -3'
miRNA:   3'- cuuGCUG---UC-GCACA-UGACGUuGUAGG- -5'
9337 3' -48.9 NC_002512.2 + 97696 0.66 0.999885
Target:  5'- --cUGACGGUGcUGcUGCUGCuguGCAUCg -3'
miRNA:   3'- cuuGCUGUCGC-AC-AUGACGu--UGUAGg -5'
9337 3' -48.9 NC_002512.2 + 102535 0.7 0.989611
Target:  5'- aGGGCGACGGCGgGUcaGCUcucguccGCGGCGUCg -3'
miRNA:   3'- -CUUGCUGUCGCaCA--UGA-------CGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 110049 0.76 0.865522
Target:  5'- aGGCGGCGGCG-GUGCgcaucgccUGCAACAUCa -3'
miRNA:   3'- cUUGCUGUCGCaCAUG--------ACGUUGUAGg -5'
9337 3' -48.9 NC_002512.2 + 110491 0.69 0.997307
Target:  5'- cAGCGGCAcGCGgcc-CUGCAGCAgggCCg -3'
miRNA:   3'- cUUGCUGU-CGCacauGACGUUGUa--GG- -5'
9337 3' -48.9 NC_002512.2 + 115368 0.71 0.988339
Target:  5'- aGACGcCGGCGUcGUACgGCAAguuCGUCCu -3'
miRNA:   3'- cUUGCuGUCGCA-CAUGaCGUU---GUAGG- -5'
9337 3' -48.9 NC_002512.2 + 115567 0.67 0.999616
Target:  5'- cGAGCGG-AGCGUGgcGCUGgAGCA-CCu -3'
miRNA:   3'- -CUUGCUgUCGCACa-UGACgUUGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 117135 0.66 0.999758
Target:  5'- --uCGGCGGCGUucgaGUcGCUGCAGCAc-- -3'
miRNA:   3'- cuuGCUGUCGCA----CA-UGACGUUGUagg -5'
9337 3' -48.9 NC_002512.2 + 124322 0.7 0.994097
Target:  5'- gGGGCcGCGGCGgacGUGCUGCGGCuguaCCu -3'
miRNA:   3'- -CUUGcUGUCGCa--CAUGACGUUGua--GG- -5'
9337 3' -48.9 NC_002512.2 + 126778 0.67 0.999521
Target:  5'- cGGCGGCGGCGacgcGUGCcGCGccCGUCCc -3'
miRNA:   3'- cUUGCUGUCGCa---CAUGaCGUu-GUAGG- -5'
9337 3' -48.9 NC_002512.2 + 127266 0.66 0.999694
Target:  5'- cGGCGACGGCGUucccccggGCguugGCGGCggCCg -3'
miRNA:   3'- cUUGCUGUCGCAca------UGa---CGUUGuaGG- -5'
9337 3' -48.9 NC_002512.2 + 128821 0.66 0.999882
Target:  5'- cGGCGGCGGCGcUGUcggcgcaGCUGCAccgcucggGCG-CCg -3'
miRNA:   3'- cUUGCUGUCGC-ACA-------UGACGU--------UGUaGG- -5'
9337 3' -48.9 NC_002512.2 + 129533 0.66 0.99981
Target:  5'- aGGACGAC-GCc-GUGCUGCGugG-CCg -3'
miRNA:   3'- -CUUGCUGuCGcaCAUGACGUugUaGG- -5'
9337 3' -48.9 NC_002512.2 + 131241 0.66 0.999851
Target:  5'- ---aGGCcGCgGUGgcCUGCAGCAUCa -3'
miRNA:   3'- cuugCUGuCG-CACauGACGUUGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.