miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9349 3' -63.3 NC_002512.2 + 143188 0.68 0.593005
Target:  5'- uGCGCGCCCUgcacgaGGguggugccgucccccUCGCGCgCCGUCcGCu -3'
miRNA:   3'- -CGUGCGGGG------CC---------------AGCGCG-GGCAGuCGu -5'
9349 3' -63.3 NC_002512.2 + 186813 0.68 0.589248
Target:  5'- cCGCGCCCCGGgaccgGUGCC--UCGGCGa -3'
miRNA:   3'- cGUGCGGGGCCag---CGCGGgcAGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 90624 0.68 0.589248
Target:  5'- cCGCGCgCCGGgcggCGCGaCCCGgcgccgCGGCc -3'
miRNA:   3'- cGUGCGgGGCCa---GCGC-GGGCa-----GUCGu -5'
9349 3' -63.3 NC_002512.2 + 137519 0.68 0.589248
Target:  5'- uGUACGUugaUCCGGcugcUCGCGUCCG-CGGCGa -3'
miRNA:   3'- -CGUGCG---GGGCC----AGCGCGGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 198143 0.68 0.589248
Target:  5'- aGCGCgaGCCCCgcgcgggccgGGUCgGCGCCgGcCGGCGg -3'
miRNA:   3'- -CGUG--CGGGG----------CCAG-CGCGGgCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 120158 0.68 0.589248
Target:  5'- cCGCGCaaCCGGcCGCGCuucCCGaUCAGCAu -3'
miRNA:   3'- cGUGCGg-GGCCaGCGCG---GGC-AGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 181394 0.68 0.585495
Target:  5'- cGUGCGCCCUGGccuccgccggggaCGCGUucaggauggCCGUCAGCu -3'
miRNA:   3'- -CGUGCGGGGCCa------------GCGCG---------GGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 94303 0.68 0.579875
Target:  5'- cGguCGUccaCCCGGUUGCGCCC--CGGCGc -3'
miRNA:   3'- -CguGCG---GGGCCAGCGCGGGcaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 94905 0.68 0.579875
Target:  5'- -gGCGUCCCGGUCGCcgggcagacaGCuCCGgaucaCGGCGa -3'
miRNA:   3'- cgUGCGGGGCCAGCG----------CG-GGCa----GUCGU- -5'
9349 3' -63.3 NC_002512.2 + 190258 0.68 0.570533
Target:  5'- uCACGCCCaucggGGUgGUGCacgaCGUCGGCu -3'
miRNA:   3'- cGUGCGGGg----CCAgCGCGg---GCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 144705 0.68 0.561229
Target:  5'- cCACGggaCCC-GUCGCGCCUggGUCAGCu -3'
miRNA:   3'- cGUGCg--GGGcCAGCGCGGG--CAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 224687 0.68 0.561229
Target:  5'- gGCugGCCCgCGGUCcUGCCCGcCcuGCu -3'
miRNA:   3'- -CGugCGGG-GCCAGcGCGGGCaGu-CGu -5'
9349 3' -63.3 NC_002512.2 + 214217 0.69 0.551966
Target:  5'- cGC-UGCCCCGGgacgucaggCG-GCUCGUCGGCu -3'
miRNA:   3'- -CGuGCGGGGCCa--------GCgCGGGCAGUCGu -5'
9349 3' -63.3 NC_002512.2 + 210972 0.69 0.551966
Target:  5'- cCGgGCCCUGuGUCGCGCCUGcgUGGCc -3'
miRNA:   3'- cGUgCGGGGC-CAGCGCGGGCa-GUCGu -5'
9349 3' -63.3 NC_002512.2 + 148075 0.69 0.542751
Target:  5'- aCGCGCCgCGGUCGUccguccCCCGgCGGCGg -3'
miRNA:   3'- cGUGCGGgGCCAGCGc-----GGGCaGUCGU- -5'
9349 3' -63.3 NC_002512.2 + 198086 0.69 0.533587
Target:  5'- cCGCGCCCCGG-CGUcucCCCGUCgccgAGUAg -3'
miRNA:   3'- cGUGCGGGGCCaGCGc--GGGCAG----UCGU- -5'
9349 3' -63.3 NC_002512.2 + 100583 0.69 0.524478
Target:  5'- cGgGCGCUCgGGUggggaaacCGCGCCCG-CGGCu -3'
miRNA:   3'- -CgUGCGGGgCCA--------GCGCGGGCaGUCGu -5'
9349 3' -63.3 NC_002512.2 + 154968 0.69 0.515429
Target:  5'- cGCGaucCGCCuCCGGgccucCGCGUCCGUC-GCGa -3'
miRNA:   3'- -CGU---GCGG-GGCCa----GCGCGGGCAGuCGU- -5'
9349 3' -63.3 NC_002512.2 + 35914 0.69 0.497527
Target:  5'- -aGCG-CCCGGUUGCGCCaUGUCGGa- -3'
miRNA:   3'- cgUGCgGGGCCAGCGCGG-GCAGUCgu -5'
9349 3' -63.3 NC_002512.2 + 223212 0.7 0.488681
Target:  5'- -gGCGUCCCGGagCGCGuCCCGgcCGGCu -3'
miRNA:   3'- cgUGCGGGGCCa-GCGC-GGGCa-GUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.